Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121453g00002 ATGCACACTCCCTTGATGCTAGTGCTATTCTTGTACTGTTGCATTGACTTCTCTGTTATTTTTTCTGAGGGAGCTGAAGCTCAAACTGCATCAGATGATGACTTATCGACTCTGCTCGTGATAAAGTCAGGTCTCGTCGATTCGATGAATCATCTGAAGGATTGGCAGATACCGAGCAATGTGACACAGCCTGCAGCAGGTTCAATAATTCATTGTAGTTGGACTGGAGTTTTGTGCAACTCTAGAGGCTTGTCACTGTCCAACCTCACCTCATTGAAGACCTTTGATGTGAGCCAGAACTTCTTCAATGGCAGCTTTCCAAGTGGTCTTGGAAGAGCTGCAGAGTTGATGTCAATCAATGCTTCGAGCAACGACTTCTCAGGCCTTCTTCCTGAGGATATTGGAAACGCGACAATGCTCGAGAGCCTTGACTTTCGCGGGAGCTACTTTGTAAGTCCAATCCCCAAGAGTTTCACAAATTTGCAGAAGCTCAAATTTCTTGGCCTTTCAGGCAATGACTTCAAAGGGGAGATTCCGGGTTACCTCGGCGAACTTTCTTCTCTGGAGACATTGATTATAGGATACAATGGGTTCAAAGGTGAGATCCCTGCAGAGTTTGGGAATCTGACCAATCTTCAATACCTTGATTTGGCTGTAAGCACTCTCAGTGGACAAATTCCACCTGAATTGGGTAAGCTGAAAAATCTCACAACAGTTTACTTGTACAGAAACAACTTCACTGGAAAAATTCCACCTCAACTTGGCAGCATTATGTCACTAGTATTTTTGGACCTATCTGACAACCAAATCTCAGGAGAGATTCCTGAAGAACTTGCAAATTTGGAAAACCTGCAGCTCCTGAATTTGATGAGCAATAAACTTACTGGTCCGGTACCGGATAAGCTTGGCGAATTGAAGAATTTGAAGGTGCTTGAGTTGTGGAAGAATTCTTTAGAAGGTCCTTTGCCGGTTAACCTTGGAAAGAACTCTCCATTGCAGTGGTTGGATGTGTCATCAAACTCGTTATCCGGCGAGATCCCACCAGGTTTGTGTACTACAGGCAATCTCACTAAACTAATCCTCTTCAACAATTCCTTCTCTGGTTCCATTCCAACTGGACTTTCAAAATGTTTGTCCTTGGTTCGTGTTCGGATTCAGAGCAATCTTATTTCCGGGACTATTCCGGTCGGCTTTGGGAACCTCCCAGCTCTTCAGCGGCTGGAGTTGGCAAAGAACAACCTCAGTGGCCAAATTCCTATAGACATTACCTTATCCTCAACTCTCTCTTTCATTGATGTATCATGGAACCACCTTCAGTCTTCTCTACCTCCTGAGATTCTTTCTGTTCCAACCCTTCAAACCTTCATTGCTTCTCACAACAGCTTTGGAGGCAATTTCCCAGATGAGTTTCAGGACTGTCCATCTCTCTCTGTTTTGGATCTTTCAAACACCGAAATCTCTGGAAAAATCCCAGAAAGCATTGCTTCTTGTCAAAGATTAGTGAACCTCAACCTTAGAAACAACCAATTGACAGGTGAAATCCCCAAATCAATCACAAACATGCCAACCTTATCTGTTCTTGACCTGTCCAACAATTCACTCTCCAGTAAAATACCCGAAAATTTCGGTGTCTCCCCGGCTCTCGAAACACTGAACCTCTCCTACAACAAGCTCGAGGGTCCGGTACCATCAAATGGCATATTAATGTCCATAAATCCTAATGATCTTGTAGGCAATCCCGGTCTTTGTGGTGGCGTTCTCCCCCCATGTTCTAAGAGTTTCACTTTCACAAACCATCAAACAGGTGGCAGGCACACCAAACACATCATCATCGGTTTCGCGACCGGCATCTCAGTGATACTATCCGTTGCTGCAGCATACTTAGCTGGCAGAATTATCTACAACAGAATCTACTTCTACAACAATTTCATCCATGATTTGTTCAAAACCAGCCATGAAGATTGGCCATGGAGACTAGTAGCATTCCAAAGGGTGAGTTTCACAAGCACTGAGATCCTAACTTGCATAAAGGAGTCAAATGTCATAGGAATGGGAGCCACAGGCATTGTTTACAAAGCCGAAATCCGAAACAGACCGCACACGATGGTCGCGGTTAAGAAGCTATGGAGATCAGGATCAGACATAGAGAATGGCAATAGTGATGTTGTAAGAGAAGTGGAGCTCTTAGGGAAACTAAGGCACAGGAACATTGTGAGGCTATTGGGGTATGTGCATAATGAAAGAGATGTTATGATGGTTTATGAGTACATGGCTAATGGGAACTTGGGGAATGCACTGCATAATGGTGAACAATGTGAGAGGTTGCTTGTGGATTGGGTTTCAAGGTACAACATTGCTCTTGGTGTTGCTCAAGGCCTTCACTATCTTCACCATGATTGCCATCCAACTGTTATTCATAGGGATATTAAGTCCAACAACATACTTCTTGATACGAATTTGGAGGCTCGGATTGCAGATTTCGGCTTGGCCAAGATGATGATCCATAAGAATGAGACTGTTTCAATGGTGGCTGGATCATATGGATACATTGCACCAGAATATGGATACACCCTGAAGGTGGACGAGAAGATTGACATATACAGTTATGGTGTGGTGCTTTTGGAGCTCATAACTGGAAAAACACCATTAGACCCTTCGTTTGGAGAATGTGTGGACATAGTGGAGTGGATAAGAAAGAAGAGGAGTAACAAAGCACTGGAAGAAGCACTAGACCCAACCATAGCTGGTCAGTGCAAGCATGTCCAAGAAGAGATGCTTCTTGTGCTGAGAATAGCACTGCTATGCACTGCAAAGCTTCCTAAGGAAAGGCCATCCATGAGGGATGTTATCACAATGCTTGGAGAGGCGAAGCCGAGGAGGAAGAGTGTCTGCCGCGATATCAGGGCCCAAGATGGTGCCATGGAAAAGCCAATATTTACTGCATCGCCTGTGGTAAGCCTTTTGTAG 2967 0.4432 MHTPLMLVLFLYCCIDFSVIFSEGAEAQTASDDDLSTLLVIKSGLVDSMNHLKDWQIPSNVTQPAAGSIIHCSWTGVLCNSRGLSLSNLTSLKTFDVSQNFFNGSFPSGLGRAAELMSINASSNDFSGLLPEDIGNATMLESLDFRGSYFVSPIPKSFTNLQKLKFLGLSGNDFKGEIPGYLGELSSLETLIIGYNGFKGEIPAEFGNLTNLQYLDLAVSTLSGQIPPELGKLKNLTTVYLYRNNFTGKIPPQLGSIMSLVFLDLSDNQISGEIPEELANLENLQLLNLMSNKLTGPVPDKLGELKNLKVLELWKNSLEGPLPVNLGKNSPLQWLDVSSNSLSGEIPPGLCTTGNLTKLILFNNSFSGSIPTGLSKCLSLVRVRIQSNLISGTIPVGFGNLPALQRLELAKNNLSGQIPIDITLSSTLSFIDVSWNHLQSSLPPEILSVPTLQTFIASHNSFGGNFPDEFQDCPSLSVLDLSNTEISGKIPESIASCQRLVNLNLRNNQLTGEIPKSITNMPTLSVLDLSNNSLSSKIPENFGVSPALETLNLSYNKLEGPVPSNGILMSINPNDLVGNPGLCGGVLPPCSKSFTFTNHQTGGRHTKHIIIGFATGISVILSVAAAYLAGRIIYNRIYFYNNFIHDLFKTSHEDWPWRLVAFQRVSFTSTEILTCIKESNVIGMGATGIVYKAEIRNRPHTMVAVKKLWRSGSDIENGNSDVVREVELLGKLRHRNIVRLLGYVHNERDVMMVYEYMANGNLGNALHNGEQCERLLVDWVSRYNIALGVAQGLHYLHHDCHPTVIHRDIKSNNILLDTNLEARIADFGLAKMMIHKNETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELITGKTPLDPSFGECVDIVEWIRKKRSNKALEEALDPTIAGQCKHVQEEMLLVLRIALLCTAKLPKERPSMRDVITMLGEAKPRRKSVCRDIRAQDGAMEKPIFTASPVVSLL 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121453g00002 988 Pfam Leucine rich repeat N-terminal domain 32 80 IPR013210 -
Stsc121453g00002 988 FunFam MDIS1-interacting receptor like kinase 1 761 971 - -
Stsc121453g00002 988 ProSitePatterns Protein kinases ATP-binding region signature. 682 707 IPR017441 GO:0005524
Stsc121453g00002 988 FunFam MDIS1-interacting receptor like kinase 1 676 760 - -
Stsc121453g00002 988 SUPERFAMILY Protein kinase-like (PK-like) 669 953 IPR011009 -
Stsc121453g00002 988 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 332 594 - -
Stsc121453g00002 988 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672|GO:0006468
Stsc121453g00002 988 ProSiteProfiles Leucine-rich repeat profile. 259 282 IPR001611 GO:0005515
Stsc121453g00002 988 FunFam MDIS1-interacting receptor like kinase 1 112 218 - -
Stsc121453g00002 988 PANTHER RECEPTOR-LIKE PROTEIN 55 377 954 - -
Stsc121453g00002 988 Pfam Leucine Rich repeat 258 274 IPR001611 GO:0005515
Stsc121453g00002 988 Gene3D Ribonuclease Inhibitor 31 181 IPR032675 -
Stsc121453g00002 988 Gene3D Transferase(Phosphotransferase) domain 1 761 973 - -
Stsc121453g00002 988 ProSiteProfiles Protein kinase domain profile. 676 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121453g00002 988 SUPERFAMILY L domain-like 202 584 - -
Stsc121453g00002 988 Gene3D Ribonuclease Inhibitor 194 348 IPR032675 -
Stsc121453g00002 988 Gene3D Phosphorylase Kinase; domain 1 675 760 - -
Stsc121453g00002 988 FunFam Piriformospora indica-insensitive protein 2 229 323 - -
Stsc121453g00002 988 PRINTS Leucine-rich repeat signature 260 273 - -
Stsc121453g00002 988 PRINTS Leucine-rich repeat signature 521 534 - -
Stsc121453g00002 988 SMART serkin_6 676 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121453g00002 988 Pfam Leucine rich repeat 499 558 IPR001611 GO:0005515
Stsc121453g00002 988 Pfam Protein kinase domain 678 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121453g00002 988 SUPERFAMILY L domain-like 75 272 - -
Stsc121453g00002 988 Gene3D Ribonuclease Inhibitor 349 591 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121453g00002 Stsc-Chr121453 12016 15832 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121453g00002 1 988 Receptor kinase-like Gene Family AT1G08590 61.266 0.0 1217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc121453g00002 Pkinase 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121453g00002 - - gmx:100793873 1519.98