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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Stsc121451g00007
CAGCGCGCTCCGGAACCTCAGGCTAGGCAGTCAAAGGCATTGCAAGCGAAAGACGAGGACGAAGAACTGGACGAGCAAGAAGATGATGAACACGGGGAAACCTTGTGCGGGGCATGTGGCGAGCATTATGGCACTGACGAATTCTGGATTTGCTGTGACATTTGCGAGAAGTGGTTCCACGGGAAATGTGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAATACAAGTGCCCATCATGCAGTAACAAGCGATCTCGCCCCTGA
270
0.5296
QRAPEPQARQSKALQAKDEDEELDEQEDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRSRP
89
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Stsc121451g00007
89
ProSitePatterns
Zinc finger PHD-type signature.
36
82
IPR019786
-
Stsc121451g00007
89
Pfam
PHD-finger
36
85
IPR019787
-
Stsc121451g00007
89
Gene3D
Zinc/RING finger domain, C3HC4 (zinc finger)
25
84
IPR013083
-
Stsc121451g00007
89
SMART
PHD_3
35
83
IPR001965
-
Stsc121451g00007
89
PANTHER
CPG BINDING PROTEIN
10
88
IPR045104
GO:0006355|GO:0042393
Stsc121451g00007
89
Coils
Coil
9
29
-
-
Stsc121451g00007
89
CDD
PHD_AL_plant
35
85
IPR044104
-
Stsc121451g00007
89
MobiDBLite
consensus disorder prediction
1
29
-
-
Stsc121451g00007
89
ProSiteProfiles
Zinc finger PHD-type profile.
33
85
IPR019787
-
Stsc121451g00007
89
SUPERFAMILY
FYVE/PHD zinc finger
25
87
IPR011011
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Stsc121451g00007
Stsc-Chr121451
31369
31995
Transposed
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Stsc121451g00007
7
88
Alfin-like Transcription Factor Family
AT3G42790
76.829
6.56e-37
122
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Transcription factors information
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Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TF
Alfin-like
Stsc121451g00007
PHD
4e-11
CL0390
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Stsc121451g00007
K26274
-
gmx:100170700
177.563
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