Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121451g00007 CAGCGCGCTCCGGAACCTCAGGCTAGGCAGTCAAAGGCATTGCAAGCGAAAGACGAGGACGAAGAACTGGACGAGCAAGAAGATGATGAACACGGGGAAACCTTGTGCGGGGCATGTGGCGAGCATTATGGCACTGACGAATTCTGGATTTGCTGTGACATTTGCGAGAAGTGGTTCCACGGGAAATGTGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAATACAAGTGCCCATCATGCAGTAACAAGCGATCTCGCCCCTGA 270 0.5296 QRAPEPQARQSKALQAKDEDEELDEQEDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRSRP 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121451g00007 89 ProSitePatterns Zinc finger PHD-type signature. 36 82 IPR019786 -
Stsc121451g00007 89 Pfam PHD-finger 36 85 IPR019787 -
Stsc121451g00007 89 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 84 IPR013083 -
Stsc121451g00007 89 SMART PHD_3 35 83 IPR001965 -
Stsc121451g00007 89 PANTHER CPG BINDING PROTEIN 10 88 IPR045104 GO:0006355|GO:0042393
Stsc121451g00007 89 Coils Coil 9 29 - -
Stsc121451g00007 89 CDD PHD_AL_plant 35 85 IPR044104 -
Stsc121451g00007 89 MobiDBLite consensus disorder prediction 1 29 - -
Stsc121451g00007 89 ProSiteProfiles Zinc finger PHD-type profile. 33 85 IPR019787 -
Stsc121451g00007 89 SUPERFAMILY FYVE/PHD zinc finger 25 87 IPR011011 -
Stsc121451g00007 89 FunFam PHD finger alfin-like protein 28 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121451g00007 Stsc-Chr121451 31369 31995 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121451g00007 7 88 Alfin-like Transcription Factor Family AT3G42790 76.829 6.56e-37 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Stsc121451g00007 PHD 4e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121451g00007 K26274 - gmx:100170700 177.563