Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121442g00004 ATGGCTTTGCTTAATCTCTTTTTCATCCTCATGCTTTTACCCTCATCATTTGAGGCTTCACTTTCAGATGAAATCCCCACCTCCTCAGGCATCGAAACCCAAGACCTAAATTCCATGATTGCACAAGCTTGCATGAACATCGAAAACCAAAACTCATGCCTCTCCAACATCCAAAACGAGCTTGTCAAGATCGGCCCCCCAAGCCCCACATCGGTGTTGAGCGCCGCACTCGGTGCGACGATCAACGAAGCAAGGGGTGCCATTGACAAGATCACAAAGTTCACGACGTTCTCAGTGAGCAACCGCGAGCAGCTAGCCATAGAAGACTGCAAGGAGCTTCTAGACTTTTCCGTTTCGGAGCTTGCATGGTCGATGGGAGAGATGAGAAGAATCCGTGGCGGAGATACAAGCGCGCAATACGAGGGAAACCTGGAAGCGTGGCTAAGTGCAGCTCTGAGCAACCAAGACACTTGCATTGAAGGCTTTGAAGGTACGGACAGGCGCCTCGAGAGTTACATTAGCGGAAGCTTGACGCAAGTTACGCAGCTTATAAGCAATGTATTATCCCTCTACACTCAACTCCATAAATTACCATTCAGCCCTCCCAGAAAGATTAACACGACGACGACGGTTGTTGATGAGTTTCCGGAGTGGATGAGCGAGGGCGACGAGGAGATGCTTAAGTCGAAATCAGCTTCGCATGCTCGTGCTGATGCTGTGGTGGCGTTGGATGGGAGTGGACATTACCGGAGCATCATGGAGGCTGTTAATGCCGCTCCGACTCATAGTAACAGGAGATACGTGATATACGTGAAGCAAGGGTTGTACAGGGAGAATGTGGATATGAAGAAGAAGATGACCAACATTATGCTCCTTGGTGATGGTATTGGCAAAACCATTCTCACCAGCAACCGCAACTTCATGCAAGGATGGACCACCTTTAGAACTGCTACACTTGCTGTATCGGGGAAAGGTTTCATTGCAAGGGACATGACATTTAGGAACACAGCTGGACCAGTGAACCACCAAGCAGTGGCACTTCGTGTGGACTCGGACCAATCAGCGTTCTACAGGTGTAGCATAGAAGGATTCCAAGACACCCTTTACGCTCATTCGCTGCGTCAATTTTACCGCGAATGTGAGATCTACGGCACCATTGACTTCATCTTTGGCAACGGTGCTGCAGTCTTGCAAAACTGCAAGATCTACACCAGAGTCCCTCTCCCGCTACAGAAGGTTACCATCACGGCCCAAGGAAGAAAAAGCCCACATCAGAGCACAGGCTTCACAATCCAAGATAGCTTTATTCTGGCAAATCAGCCCACTTATTTGGGCCGGCCTTGGAAGCAGTACTCGAGAACAGTTTACATTAACACGTATATGAGTGCGCAAGTGCAGCCTCAAGGGTGGCTTGAGTGGTTTGGGAACTTTGCATTGGACACATTGTGGTATGGTGAGTATAGGAACTATGGGCCTGGGTCAGCACTTGGTGGAAGGGTCAAATGGCCCGGTTTTCATGTTATTAAGAATCCTGCTGCAGCTAGTTACTTTACGGTTCAGAGGTTCATTAACGGTAACTCATGGTTGCCAAGGACTGGTGTCAAGTTCACTTCAGGCTTGACCAATTGA 1629 0.4893 MALLNLFFILMLLPSSFEASLSDEIPTSSGIETQDLNSMIAQACMNIENQNSCLSNIQNELVKIGPPSPTSVLSAALGATINEARGAIDKITKFTTFSVSNREQLAIEDCKELLDFSVSELAWSMGEMRRIRGGDTSAQYEGNLEAWLSAALSNQDTCIEGFEGTDRRLESYISGSLTQVTQLISNVLSLYTQLHKLPFSPPRKINTTTTVVDEFPEWMSEGDEEMLKSKSASHARADAVVALDGSGHYRSIMEAVNAAPTHSNRRYVIYVKQGLYRENVDMKKKMTNIMLLGDGIGKTILTSNRNFMQGWTTFRTATLAVSGKGFIARDMTFRNTAGPVNHQAVALRVDSDQSAFYRCSIEGFQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSFILANQPTYLGRPWKQYSRTVYINTYMSAQVQPQGWLEWFGNFALDTLWYGEYRNYGPGSALGGRVKWPGFHVIKNPAAASYFTVQRFINGNSWLPRTGVKFTSGLTN 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121442g00004 542 SUPERFAMILY Pectin lyase-like 233 539 IPR011050 -
Stsc121442g00004 542 ProSitePatterns Pectinesterase signature 2. 382 391 IPR033131 -
Stsc121442g00004 542 Pfam Plant invertase/pectin methylesterase inhibitor 39 190 IPR006501 GO:0004857
Stsc121442g00004 542 NCBIfam pectinesterase inhibitor domain 5 195 IPR006501 GO:0004857
Stsc121442g00004 542 Pfam Pectinesterase 238 526 IPR000070 GO:0030599|GO:0042545
Stsc121442g00004 542 CDD PMEI-like_3 43 196 - -
Stsc121442g00004 542 Gene3D - 232 540 IPR012334 -
Stsc121442g00004 542 FunFam Pectinesterase 232 540 - -
Stsc121442g00004 542 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 195 IPR035513 -
Stsc121442g00004 542 PANTHER PECTINESTERASE 13 530 - -
Stsc121442g00004 542 SMART PMEI_2 35 190 IPR006501 GO:0004857
Stsc121442g00004 542 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 195 IPR035513 -
Stsc121442g00004 542 FunFam Pectinesterase 37 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121442g00004 Stsc-Chr121442 11543 13991 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121442g00004 1 542 Carbohydrate Esterase AT3G05620 60.541 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121442g00004 K01051 - gmx:100810565 914.45