Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121442g00003 ATGGCAATCATGTCAAAGATGTCCCTAACCTTATGCATGTTGTTATGTCAATTTGCAACTCTACTTGCATCATCTTCATCCTCTAATAATTCCTCCACAGACACAATATGCAACCTCACACCTTATCCAACATTTTGCAAATCCAATTCTCCTTCTAATGTCCAAAGAGGTGACATCCATGAGTATGGGAGTTTCTATTCAAACAAGTCCCTGTCATCATCAAGGGATCTTCTCTCATTGGTCTCTACCTACTTACAATCTCCCTCCAAATTCTCCCACTCAACCATTCTCGCCCTTCAAGATTGCCACCTCTTACTTGACCTCAACATAGATTTCTGGACCAACACTCTACAAACCATAGACAACAGCACCACCCTAACTAGTTCCCAGGCTGAAACCGTTCTTACAATGATTAGTGCTACATTAACCAATCTTGATACCTGCTTAGACAGCCTTAACCAAGCCACGTCATCATCCCCTGACAACGACCTAGTAAGCTCTATTTCAAACGGAACCATCTATTCCAGCATATCTCTTGCACTCTTTAAGCAGGGTTGGGCATCCAGCACAGCCACACCACAGAGTAGAAAGCTCTTATCAGAAAGAAATGATGCGTACTTATGGGAACAGAGGCTTTACGAGATAATCAGAAAGAGAGGGAGAAAGCTGCTTCAGAGTGCTCCTGACGGTGTTGTTGTGAACCAAACGGTGGTGGTGAATCCTGATGGATCTGGAAACTACACAACCATAACAGATGCGGTGGCTGCTGCACCAAACAACACCGGTGGTACCAAAGGATTCTTTGTGATCTATGTGGTTGCAGGAGTGTACGAAGAGTATGTATCTATTCCAAAATACAAGCAGTACTTGATGATGATCGGTGATGGTATTAACCAGACCATAATCACCGGCAATCACAGCGCCGGCACTAACTACACCACCTTCAATTCTTATTCATTTGCTGTGGTTGCGCAAGGATTCGTGGCTATGAACATAACATTTCGCAACACAGCAGGAGCAAGCAATTTCCAAGCGGTAGCTCTTAGAAGCGGGGCAGATCTATCTGCATTCTACAATTGCAGCTTCGAAGGCTATCAAGACACCTTATACACACATTCAATGAGACAATTCTACAGAAATTGCGACATTTACGGCACAATTGACTTCATATTTGGTAACGCTGCTGTTGTGTTACAAAACTGTAACATCTTGCCACGTCTCCCAATGAGTGGCCAGTACAACACCATCACAGCACAGGGAAGAACTGATATTAACCAAAACACAGGGACCTCTATACACAACTGTACCATAACTGCCGCTACCAACTTAGGCACCACGAAAACCTATCTAGGGAGGCCATGGAAGCAGTATTCAAGAACGGTTTACATGCAGTCTTTCATGGACAGTTTGATTGATCCTGCTGGCTGGGCAGAGTGGTCAGGGACCTTGTATTTGGACACACTTTATTATGCGGAATATAATAATTCGGGTCCTGGATCTAACACTAGTAATAGGGTTACTTGGTCAGGCTACCATATCATTAATGCCACTGATGCAGAGACTTTCACTGTTTCCAATTTCATATCCGGGGGTGTTTGGTTGCCTCGTACAGGGGTCCCTTACTTTCTTGATTTAATTTAA 1641 0.4375 MAIMSKMSLTLCMLLCQFATLLASSSSSNNSSTDTICNLTPYPTFCKSNSPSNVQRGDIHEYGSFYSNKSLSSSRDLLSLVSTYLQSPSKFSHSTILALQDCHLLLDLNIDFWTNTLQTIDNSTTLTSSQAETVLTMISATLTNLDTCLDSLNQATSSSPDNDLVSSISNGTIYSSISLALFKQGWASSTATPQSRKLLSERNDAYLWEQRLYEIIRKRGRKLLQSAPDGVVVNQTVVVNPDGSGNYTTITDAVAAAPNNTGGTKGFFVIYVVAGVYEEYVSIPKYKQYLMMIGDGINQTIITGNHSAGTNYTTFNSYSFAVVAQGFVAMNITFRNTAGASNFQAVALRSGADLSAFYNCSFEGYQDTLYTHSMRQFYRNCDIYGTIDFIFGNAAVVLQNCNILPRLPMSGQYNTITAQGRTDINQNTGTSIHNCTITAATNLGTTKTYLGRPWKQYSRTVYMQSFMDSLIDPAGWAEWSGTLYLDTLYYAEYNNSGPGSNTSNRVTWSGYHIINATDAETFTVSNFISGGVWLPRTGVPYFLDLI 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121442g00003 546 Gene3D - 230 545 IPR012334 -
Stsc121442g00003 546 Pfam Pectinesterase 237 530 IPR000070 GO:0030599|GO:0042545
Stsc121442g00003 546 NCBIfam pectinesterase inhibitor domain 9 184 IPR006501 GO:0004857
Stsc121442g00003 546 CDD PMEI-like_3 35 187 - -
Stsc121442g00003 546 PANTHER PECTINESTERASE 16 535 - -
Stsc121442g00003 546 SMART PMEI_2 28 181 IPR006501 GO:0004857
Stsc121442g00003 546 SUPERFAMILY Pectin lyase-like 232 543 IPR011050 -
Stsc121442g00003 546 ProSitePatterns Pectinesterase signature 2. 383 392 IPR033131 -
Stsc121442g00003 546 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 184 IPR035513 -
Stsc121442g00003 546 FunFam Pectinesterase 231 545 - -
Stsc121442g00003 546 Pfam Plant invertase/pectin methylesterase inhibitor 34 181 IPR006501 GO:0004857
Stsc121442g00003 546 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 184 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121442g00003 Stsc-Chr121442 7731 9930 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121442g00003 4 546 Carbohydrate Esterase AT4G02330 50.960 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121442g00003 K01051 - gmx:100801141 763.837