Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121442g00002 ATGGCTACTTCAGATCTATCTATAATAAGCTTATTATCATTCACTGCCATTGTTATTATTATTTTCTCCAACTTGGCTTCTTCTCTTGCATCTTCATCTTCCTCCATTTGCGACCTCACACCATATCCAGCCTTCTGCAAATCCAATTCCCCTTCCAGAGGCCGCAGTGACATACATAGCTATGGCCGATTATTCGCACGCAAATCCCTCACATCATCTACAAGGTTCCGCTCATTAGTCTCTAGGTATCTCAAACATCCTTCCAGAAACAATTTATCTGACTCCATGGTTCTTGCCCTTAAAGATTGCTACCTTCTAAGTGACCTCAACGTAGATTTCTGGACCAACACTCTCAACACCATAAATTCCACTGACACACTCAGCAGCTCAGAGGATGAAGATTCTTTGCATAGCATGATTAGTGCTACTCTAACCAACCACGACACATGCTTAGATAGCCTCCGACAAGCCACAACCACACACCAGGATGAATCACTCATTAGCAGTATCTCCAATGGGACCATGTTTTATAGCATATCCCTTGCATTTTTCAAGCACGGTTGGGGAAGAGGAAGAGGAAGAGGAAGAAAACTGGTTCAGTTAGATTTTGCGGGGGATGTTACCGTGAGCCAAACGGTGGTGGTGAACCCAGATGGCTCTGGAGACTACACAACTATTAATGATGCAGTGGGTGCAGCACCAAACAACACCCGTGGTATCAATGGCTTTTTTGTAATTTATGTGGTTGCAGGAGTCTATGAAGAATATGTTTACATTCCAAAAACCAAGCAGTATTTGATGATGATAGGTGATGGTATCAACCAGACTATAGTCACCGGAAACCGGAGCGTCGTTGATGGCTGGACAACCTTCAACACTGCCACCTTTGCTGTGGTTGCACAAGGCTTTGTGGCGGTGAACATGACATTTCGCAACACAGCGGGAGCAATTAACCACCAAGCAGTGGCGCTTCGGAGCGGCGCAGATCTATCTGCATTTTATAGCTGTAGCTTTGAAGGGTACCAAGACACATTGTACACACATTCTATGAGGCAGTTCTACAGAAACTGTGACATTTATGGCACTGTGGACTTCATATTTGGCAATGCAGCTGTTGTCTTTCAAGATTGTAACATCTACCCGAGATTACCGATGAGTAATCAATTCAATGCAATCACTGCACAGGGTAGAACTGATGTGAACCAAAACACCGGCACCTCCATACACAATTGCACCATAATGGCCGCAGCTGACTTAGCCGCTAGCAACGGCACCACACAAACGTACCTAGGGAGGCCATGGAAGCAGTATTCAAGAACAGTTTACATGCAATCTTTCATGGATAGCTTGATCAATCCATTGGGTTGGAGTGCTTGGTCAGGGGACTTTGCCTTAGACACCCTTTATTATGCTGAATATGATAATTGGGGACCGGGATCAAACACCAGTAGCAGGGTTACTTGGCCAGGTTACGATGTGACTTTGGATGGCATAGGTGCAGTTAATTTCACAGTTTCCAATTTCATATTTGGTGATTTTTGGCTTCCTGCCACTGGAGTGCCATTTTTAGCTGGTTTATCCTGA 1584 0.4463 MATSDLSIISLLSFTAIVIIIFSNLASSLASSSSSICDLTPYPAFCKSNSPSRGRSDIHSYGRLFARKSLTSSTRFRSLVSRYLKHPSRNNLSDSMVLALKDCYLLSDLNVDFWTNTLNTINSTDTLSSSEDEDSLHSMISATLTNHDTCLDSLRQATTTHQDESLISSISNGTMFYSISLAFFKHGWGRGRGRGRKLVQLDFAGDVTVSQTVVVNPDGSGDYTTINDAVGAAPNNTRGINGFFVIYVVAGVYEEYVYIPKTKQYLMMIGDGINQTIVTGNRSVVDGWTTFNTATFAVVAQGFVAVNMTFRNTAGAINHQAVALRSGADLSAFYSCSFEGYQDTLYTHSMRQFYRNCDIYGTVDFIFGNAAVVFQDCNIYPRLPMSNQFNAITAQGRTDVNQNTGTSIHNCTIMAAADLAASNGTTQTYLGRPWKQYSRTVYMQSFMDSLINPLGWSAWSGDFALDTLYYAEYDNWGPGSNTSSRVTWPGYDVTLDGIGAVNFTVSNFIFGDFWLPATGVPFLAGLS 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121442g00002 527 Gene3D - 206 526 IPR012334 -
Stsc121442g00002 527 FunFam Pectinesterase 206 526 - -
Stsc121442g00002 527 Pfam Plant invertase/pectin methylesterase inhibitor 34 182 IPR006501 GO:0004857
Stsc121442g00002 527 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 186 IPR035513 -
Stsc121442g00002 527 SMART PMEI_2 28 183 IPR006501 GO:0004857
Stsc121442g00002 527 Pfam Pectinesterase 213 512 IPR000070 GO:0030599|GO:0042545
Stsc121442g00002 527 PANTHER PECTINESTERASE 18 516 - -
Stsc121442g00002 527 ProSitePatterns Pectinesterase signature 2. 359 368 IPR033131 -
Stsc121442g00002 527 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 186 IPR035513 -
Stsc121442g00002 527 CDD PMEI-like_3 36 188 - -
Stsc121442g00002 527 SUPERFAMILY Pectin lyase-like 208 525 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121442g00002 Stsc-Chr121442 4135 6860 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121442g00002 11 526 Carbohydrate Esterase AT4G02330 52.604 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121442g00002 K01051 - gmx:100801141 715.687