Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121441g00007 ATGTCTAGTGGGGCAACGCACTGGTGTTACGAATGCAGGCAACCAATCGTGCTCGGAGGGAGAGATGCTGTTTGTCCCTACTGTGATGGAGGGTTTGTGCAAGAACTTAACGAATTGCAAGGATTTGCACCTCAACATTCCTTTCCATCATCACAGATGGGGGAGTTCCAGCAGATGCCTGATTTTTTCGATGCTTTGCATGCTTTTATGGGGCGAAGGGGTCCTGATCCAAGATTTGGTTTTATAGATGCTGTGGATAATTTCATGAGGCAGAGAATGGCTGGAAGGCACCCCAATTTTGATGTTAGGGGGAGGTCTGGTCCTGCTCCTGCCCCGGGTGCTGAACAGAGTTGGGGCGTTGTTAGTTCAGGTCCTTATTTGATATTTCATGGTCAAGTTCCTGGGTTCACCTTGGCTAATGGCAGTCCAAGAGGTGGTCCGAGGCGTGTTGATTTCAGTGACTACTTTATGGGCCCTGGACTTGAAGAACTTATTGAGCAACTCACCATGAATGAACGGCGTGGTCCACCCCCAGCTGAACGCTCTTCAATTGACGCGATGCCTACAATTAAGATCACGAGTGCACATCTTCGCCAAGATTCACACTGTCCAGTGTGTCAAGACAAATTTGAACTGGGATCTGAAGCCAGAGAGATGCCATGTAACCATATCTACCACTCTGATTGTATTGTCCCTTGGTTGGTTCAGCATAACACGTGTCCTGTTTGCCGTGTTGAACTTCCACCTCAAGGACATGTTAGTTCTCGTGGTAGTCGAAGTGGGGGTGGAAGGAATGCCAACAACGGTAGTGGTGACAGCGATAGCAGCTCCGGGAGCAGGGAGAATAGCCATCAGAGCCATGGAAGGAGAAATCCTCTATCATTTCTGTGGCCGTTCCGTTCTTCCAGCTCAAACAATAATCATGGAAGCTTCTTCTAG 939 0.4878 MSSGATHWCYECRQPIVLGGRDAVCPYCDGGFVQELNELQGFAPQHSFPSSQMGEFQQMPDFFDALHAFMGRRGPDPRFGFIDAVDNFMRQRMAGRHPNFDVRGRSGPAPAPGAEQSWGVVSSGPYLIFHGQVPGFTLANGSPRGGPRRVDFSDYFMGPGLEELIEQLTMNERRGPPPAERSSIDAMPTIKITSAHLRQDSHCPVCQDKFELGSEAREMPCNHIYHSDCIVPWLVQHNTCPVCRVELPPQGHVSSRGSRSGGGRNANNGSGDSDSSSGSRENSHQSHGRRNPLSFLWPFRSSSSNNNHGSFF 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121441g00007 312 MobiDBLite consensus disorder prediction 253 282 - -
Stsc121441g00007 312 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Stsc121441g00007 312 CDD RING-H2_RNF126-like 203 244 - -
Stsc121441g00007 312 Pfam Ring finger domain 202 244 IPR001841 -
Stsc121441g00007 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 134 248 - -
Stsc121441g00007 312 MobiDBLite consensus disorder prediction 251 299 - -
Stsc121441g00007 312 SMART ring_2 203 243 IPR001841 -
Stsc121441g00007 312 SUPERFAMILY RING/U-box 183 250 - -
Stsc121441g00007 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 250 IPR013083 -
Stsc121441g00007 312 ProSiteProfiles Zinc finger RING-type profile. 203 244 IPR001841 -
Stsc121441g00007 312 FunFam E3 ubiquitin-protein ligase RING1-like 166 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121441g00007 Stsc-Chr121441 29286 31750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121441g00007 147 259 C3H Transcription Factor Family AT5G01980 40.000 1.44e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121441g00007 K11982 - gmx:100813674 490.345