Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121441g00002 ATGAGGAAGAAACTTGATACACGTTTCCCTGCTGCTAGGATTAAGAAAATCATGCAAGCTGATGAAGATGTAGGGAAGATTGCTATGGCTGTGCCCCTTCTAGTTTCTAAAGCATTAGAGCTATTCCTTCAAGATTTATGTAACAGGACATATGAGATAACTCTTAGGAGAGGGGCAAAGACCATGACTGCTTTGCATTTAAAGCATTGTGTGCAGACATTTAATGTCTTTGATTTTCTGAAAGATATTCTCAACAAGGTTCCAGATTTAGGTGGTTCTGGTGTGGCGTGTGATGATCGTTCTGTCACTAAGAGGAGGAAAGTCGCAGAAGGTGATGATAATGACAGCGACGAGGAGCAAAAGAGAAATAAGATGCTAGAGGCCGCATATACAAGTGGCCGAGGCAGGGGTAGAGGCAGAGGTAGAGGCCGTGGCCGAGGACATAGAACAGCAGACCATGATCATGATCATGATATGATTTCGCCTGTCAAGTTTGAAGAAGAGTCTGATGTATTGAAGCAAAATGGCAAGCACACTCATAGCAGTGAAAGCCCGGAGAATGTTTTGGAACATGAAGAAGCTAAGCCGTGTTTTTCGGTTAGCAAGCCAGCTGAATCGTGCGTTCGGAATATCGACTTAAATATGGCTCCAGATGATGAGGAAATGGATTCATTCGACACGCCAGGTCCAGTTCCGGTAATGGATTCATCAGACACACCAACTCATGCCCATGATACCTCATCTGCAAAACAAATGGTAGAAGAAGAGAAGCATGAGGAATACCCTGGATGGTCCTTTTCGGATATGGCGGAGATGAGCATTGACGCCATTCAACTGGCGAACATAAACGGAAAGATAGATGAAGACGATGAAGATTACGACGAAGAAACATAG 894 0.4407 MRKKLDTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCNRTYEITLRRGAKTMTALHLKHCVQTFNVFDFLKDILNKVPDLGGSGVACDDRSVTKRRKVAEGDDNDSDEEQKRNKMLEAAYTSGRGRGRGRGRGRGRGHRTADHDHDHDMISPVKFEEESDVLKQNGKHTHSSESPENVLEHEEAKPCFSVSKPAESCVRNIDLNMAPDDEEMDSFDTPGPVPVMDSSDTPTHAHDTSSAKQMVEEEKHEEYPGWSFSDMAEMSIDAIQLANINGKIDEDDEDYDEET 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121441g00002 297 MobiDBLite consensus disorder prediction 127 192 - -
Stsc121441g00002 297 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 122 - -
Stsc121441g00002 297 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Stsc121441g00002 297 MobiDBLite consensus disorder prediction 147 192 - -
Stsc121441g00002 297 FunFam dr1-associated corepressor homolog 1 86 - -
Stsc121441g00002 297 SUPERFAMILY Histone-fold 3 88 IPR009072 GO:0046982
Stsc121441g00002 297 Gene3D Histone, subunit A 1 72 IPR009072 GO:0046982
Stsc121441g00002 297 MobiDBLite consensus disorder prediction 235 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121441g00002 Stsc-Chr121441 4296 6759 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121441g00002 1 127 CCAAT-HAP5 Transcription Factor Family AT3G12480 70.677 9.69e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Stsc121441g00002 CBFD_NFYB_HMF 3e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121441g00002 K21752 - gmx:100814800 338.576