Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121440g00001 ATGCCAGAAAGCATGAGTATTTCTGTGAATGGACAATCTCAAGTTCCACCCGGGTTCAGGTTCCATCCAACTGAAGAAGAACTCCTTCAATACTACTTAAGGAAGAAGGTCTCTTATGAGAAGATTGACCTTGATGTTATTCGCGATGTTGATCTCAACAAACTTGAACCTTGGGACATACAAGAGAAGTGTAAGATAGGAACCACCCCACAAAATGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTACCCGACCGGAACCCGGACGAATAGGGCGACTGCGGCCGGGTTCTGGAAGGCTACTGGCCGCGACAAGGTGATATACAGCAACGGGAAGAGGATTGGAATGAGGAAGACGTTGGTGTTCTACAAAGGAAGAGCCCCTCATGGCCAAAAATCTGATTGGATCATGCATGAGTATAGGCTGGATGACAACACCAACGATGCCAATATTGTGTCAAATGTGATGGGAGATGCAGCACAAGAAGAAGGTTGGGTGGTGTGTAGGATATTCAAGAAGAAGAACCATCTTAAAACCCTAGATAGCCCTTTAACCTCTTCCATCTCCGGCGGCGACGGAGGAAGGAGGAGCCACCACCACCACCACCTGTTCGACTCGTGCGACGAGGGCGCCTTAGAGCAAATCCTCCAACAAATGAGAAGAGGTGGTGGTGGTGATTGCAAGGAAGAGAACAACTATGATCATCAATCCAACAACAATAACAACAATTATGGTGGATCATCATCTTCATCAACAAGGTATGCAAGACCCTTTGACACAATCAATGGAGGCGGAGGCGGAGGCGGAAACGAAGGAGTGTACCATAACAATAATAACAATGATAGCAGGTTCTTGAAGCTTCCAAGCCTAGAGAGTCCAAAATCAACAAGCATGGATCATAATAATGATGATAGCAATGAAAATAATAATAATGGGTACCATCCAATTATCCCAGTTGAGATGGTAACTGAAAATGAAGGCTCATTCACATGTGAAAATCCCAACACTAACATGTTTCATCATCACCATTCATCAATGGTGCATGGTGGCGGCAACGGCGACGGCGGTGGTGGACTTACAAATTGGGTAGCGCTAGATAGGCTTGTTGCTTCTCAGCTTAACGGTCAGACCGAAGCTTCTAGGCAACTCTCTTGCTTCAATGACCCCACCATGGGGTTTTCAACCGGGAATACCGATCTTTTATTTTCAACCGTTAGATCTACATCATCGTTGTCTTCATCTTCAGCGTCCACACATCTAAGGGCTGTTGTTAGTGCGAGTCCAGGTACATACATTAATCCTGGAGCACAGGATTACACCACCACAAGCGAGATTGACCTTTGGAACTTCACAAGATCCACGTCTTCGTTATTGTCATCCTCCGAGCCATTGTGCCACGTGTCCAACACGTCAGTGTAG 1422 0.4599 MPESMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTNDANIVSNVMGDAAQEEGWVVCRIFKKKNHLKTLDSPLTSSISGGDGGRRSHHHHHLFDSCDEGALEQILQQMRRGGGGDCKEENNYDHQSNNNNNNYGGSSSSSTRYARPFDTINGGGGGGGNEGVYHNNNNNDSRFLKLPSLESPKSTSMDHNNDDSNENNNNGYHPIIPVEMVTENEGSFTCENPNTNMFHHHHSSMVHGGGNGDGGGGLTNWVALDRLVASQLNGQTEASRQLSCFNDPTMGFSTGNTDLLFSTVRSTSSLSSSSASTHLRAVVSASPGTYINPGAQDYTTTSEIDLWNFTRSTSSLLSSSEPLCHVSNTSV 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121440g00001 473 MobiDBLite consensus disorder prediction 273 297 - -
Stsc121440g00001 473 MobiDBLite consensus disorder prediction 235 258 - -
Stsc121440g00001 473 FunFam NAC domain-containing protein 24 178 - -
Stsc121440g00001 473 SUPERFAMILY NAC domain 10 174 IPR036093 GO:0003677|GO:0006355
Stsc121440g00001 473 MobiDBLite consensus disorder prediction 182 203 - -
Stsc121440g00001 473 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Stsc121440g00001 473 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 283 - -
Stsc121440g00001 473 MobiDBLite consensus disorder prediction 221 310 - -
Stsc121440g00001 473 Gene3D NAC domain 24 179 IPR036093 GO:0003677|GO:0006355
Stsc121440g00001 473 ProSiteProfiles NAC domain profile. 15 174 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121440g00001 Stsc-Chr121440 2658 5498 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121440g00001 1 472 NAC Transcription Factor Family AT2G46770 49.686 1.80e-129 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc121440g00001 NAM 4.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121440g00001 - - ahf:112734309 722.235