Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121436g00003 ATGGAGGCGAAGGATGATTTTGAGGTGGACAATTTGACCACACCCACCATCACAGCTACAGGGACCAGTTTCTCTCAACTACTCTTCGGAGATGACGATGATCATCAACATGCATTGGGTTTTGCTACTGCTCTGGACCACTACAACAATCTCAATATCAATAACACCCATCTCCCTCTTTTCTCCATTGACAAGCCACCCAAAATGCTCTCTTTTGGGGACTTCCATGATGTTGCAGAAGAACAATCCCACCTCTTCCTCCCTCAAAACAACTCCAACCCTCAGAAATCTGTTATCACTTCTAGTGATTCTTCTTCAGCTTCTTCATGCAACCACGCAACCACTGTCATTAACTCCATATCCAAGACCAATAATAGTTTCCAGAGAAAGCGAAATGGGCCGGGGCTACAACCGATTGTGAAGGTGCCTAATAAGAAGAACAAAGCAGAGAATCAGAGTTCAACTTCATCAACCGGTCATGCAAAGAGGAAGGAGAAACTCGGGGAAAGAATTGCAGCATTGCAACAGCTTGTTTCTCCCTTTGGGAAGACAGATACAGCTTCGGTGCTTCACGAGGCAATGGGATACATAAGATTTCTCCATGACCAAGTTCAAGTGCTGTGCTCCCCTTACTTGCAGCGCTTGCCTTCTTCTTCACCTTCATCATCTTCATTTCAACATCAACGTGGGGAGGAGGGAGATGTTAAAGAAGACAACAGGGACTTGAGGAGCATGGGACTCTGCCTCATCCCACTCCAATGCACCCTACACGTGTCAAGTACCAATGGTGCTGATTTCTGGTCACCTGCTGGTGCAGCCAATAACAGTGTTTCACCCTATGCACACCCTCTCTCAAAATAG 861 0.4634 MEAKDDFEVDNLTTPTITATGTSFSQLLFGDDDDHQHALGFATALDHYNNLNINNTHLPLFSIDKPPKMLSFGDFHDVAEEQSHLFLPQNNSNPQKSVITSSDSSSASSCNHATTVINSISKTNNSFQRKRNGPGLQPIVKVPNKKNKAENQSSTSSTGHAKRKEKLGERIAALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQRLPSSSPSSSSFQHQRGEEGDVKEDNRDLRSMGLCLIPLQCTLHVSSTNGADFWSPAGAANNSVSPYAHPLSK 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121436g00003 286 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 200 IPR011598 GO:0046983
Stsc121436g00003 286 Gene3D - 145 215 IPR036638 GO:0046983
Stsc121436g00003 286 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 212 IPR036638 GO:0046983
Stsc121436g00003 286 FunFam Transcription factor bHLH113 142 214 - -
Stsc121436g00003 286 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 70 258 - -
Stsc121436g00003 286 MobiDBLite consensus disorder prediction 217 238 - -
Stsc121436g00003 286 CDD bHLH_AtbHLH_like 162 207 IPR045239 -
Stsc121436g00003 286 MobiDBLite consensus disorder prediction 123 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121436g00003 Stsc-Chr121436 22385 23953 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121436g00003 152 276 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 52.000 5.48e-36 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121436g00003 - - ahf:112711948 405.216