Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121435g00003 ATGGAAACGAAGAAAAGAAGGGAAAATAATATTCGGAAAATGGGTTTGTTGGCTCCCCTTTTAAGTTCATTAGGACCATTTGTACCAAAGAAGAAAAACTCTTATGTTCAATTGAAGGCACAGATTGCTCAAAGGGCTGGATTATTATTTGAACCTCCTAAACAAACTACTATTAAAGGTGAAGAGGCTGGAAATTTATCTAGCATGAATTTCATGAGTGGCAGGAATCAGACTACTCTTGACACTTTATCTCGTTTAAAGAATAAGTCATGTTTAGGATCAGGCTCAAGCTCGAAATCAAGACCACCGCCATCACCGTCTCCGTCACCATCCCCGTCAACAACAGAACCACAAAGGAAGCCATCCGGTTTGTTGATACGTAGAGACTACAGAGATAGTAACTGGACTGAGTCTGAACTCGATGCACTTTGGCTCGGCGTTCGAAGACACGGCCAAGGAAATTGGAAAGCAATCATTGCAGATCCACGTCTGTTCCCAGCCTCCCTAAGCCACAAAACTCCCCAAGAACTTTCTAGAATGTGGAAGAAACAGAAACTCAAACTCTTTCCATCCCGGTCAGTTTCATCACCATCACCATCATCAGTTCCAGTCACAAACACTCCTCAAAAGTTACAATCACAACCGCCTCCTTCACCTCCACCACCACCACCACCGCCGCCACCGCCACCGCCGCCTTCTTCTGCATTAGAGAAAAATAAAGGGAAGGAGGTGGTTGACGATAGAGCAGAAACGACCATTTTGATACCGACTCAGCTAGATAGGGTTCCTCCTCATATGTATTTAGAGTATGGAATTAAGAAGGACCCTTCTTACACTTTTGAAGAAAAACATTCAATCAACAGCGACATCAACTTTCCTTCAGTTTCAAGCTCTGATCCTATTCAAGGGTATTCCTCATCATTAGGACTTTCTCATGGAGTGACTCATCAGCATGCAAGTGCACCTCCTTTTCAATGGGAATCAACACCAGTTTATGGGTTGTTGGCCGCTATGGAAGAATATTGCTCAAGGGTTTGTGATGTGAATCAAACTGCATTATCAAGTATGAAGAGATTCCCAGTAAAAGAAAAAGAAAAGGTAGCGATCTCAGAATCTGAGGATGATGATGATACTGAACCTCAACTGCTCCTTTTGGGTGGTCAATTCCAAATTTTCGATATTCTTGATCAGATGAAGAAGAACAACAATAATCCAGAAGAAAAAAAGAATATTGAAGCTGAAAAAAAAGAGGAAGATAAACCAGTTTTGAAATTACAGAGCCAGAGACAGATCAGAAGTTCCAAGTACAACCATCCAGAAGTTCGATCACACATTCAATCTCCAGTTACAGCAATTCAAATCCAAAGGTTCTTACCAAAAGCAGAAATTGGGAAAGTTAACTGGAATGCGCTGAGCACAAGACTGGATGCAGCTCTTAGGATGACAGAAAAGGAGGCGGTGAATCGACCACCACCAAAGCCTCCAAACTTCCCATCAGAAGGAGGCAAAGGAACGAGATCTTGCAAAGTTGCAAACGGCGGCAATAGCTCAGTTCCAGTCAGCAGTGGCGCCGAGGACGGCGCCGCCGCGGAGAAGATGCGGACGCCGGTTGTAACCGCGGTGAAAGAAACAACGACAACAAACAACTCCGGGGACGATGTGTTAACCATGTTACAATATGCATAA 1686 0.4359 METKKRRENNIRKMGLLAPLLSSLGPFVPKKKNSYVQLKAQIAQRAGLLFEPPKQTTIKGEEAGNLSSMNFMSGRNQTTLDTLSRLKNKSCLGSGSSSKSRPPPSPSPSPSPSTTEPQRKPSGLLIRRDYRDSNWTESELDALWLGVRRHGQGNWKAIIADPRLFPASLSHKTPQELSRMWKKQKLKLFPSRSVSSPSPSSVPVTNTPQKLQSQPPPSPPPPPPPPPPPPPPSSALEKNKGKEVVDDRAETTILIPTQLDRVPPHMYLEYGIKKDPSYTFEEKHSINSDINFPSVSSSDPIQGYSSSLGLSHGVTHQHASAPPFQWESTPVYGLLAAMEEYCSRVCDVNQTALSSMKRFPVKEKEKVAISESEDDDDTEPQLLLLGGQFQIFDILDQMKKNNNNPEEKKNIEAEKKEEDKPVLKLQSQRQIRSSKYNHPEVRSHIQSPVTAIQIQRFLPKAEIGKVNWNALSTRLDAALRMTEKEAVNRPPPKPPNFPSEGGKGTRSCKVANGGNSSVPVSSGAEDGAAAEKMRTPVVTAVKETTTTNNSGDDVLTMLQYA 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121435g00003 561 MobiDBLite consensus disorder prediction 484 535 - -
Stsc121435g00003 561 MobiDBLite consensus disorder prediction 426 444 - -
Stsc121435g00003 561 MobiDBLite consensus disorder prediction 88 128 - -
Stsc121435g00003 561 SUPERFAMILY Formin homology 2 domain (FH2 domain) 221 230 - -
Stsc121435g00003 561 MobiDBLite consensus disorder prediction 101 115 - -
Stsc121435g00003 561 MobiDBLite consensus disorder prediction 400 444 - -
Stsc121435g00003 561 Gene3D - 135 210 - -
Stsc121435g00003 561 ProSiteProfiles Myb-like domain profile. 127 185 IPR001005 -
Stsc121435g00003 561 SUPERFAMILY Homeodomain-like 131 185 IPR009057 -
Stsc121435g00003 561 CDD SANT_TRF 135 182 - -
Stsc121435g00003 561 MobiDBLite consensus disorder prediction 210 235 - -
Stsc121435g00003 561 MobiDBLite consensus disorder prediction 189 209 - -
Stsc121435g00003 561 MobiDBLite consensus disorder prediction 189 246 - -
Stsc121435g00003 561 PANTHER LP07818P1 98 495 - -
Stsc121435g00003 561 MobiDBLite consensus disorder prediction 400 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121435g00003 Stsc-Chr121435 23620 33526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121435g00003 135 182 Single Myb Histone (SMH) Gene Family AT1G72740 41.667 6.24e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121435g00003 - - adu:127740530 328.946