Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121430g00005 ATGCATAAAATGCCTGGGACAAAGCAGAAAGATGAAACGGCCCAAAATCCAGAATCACCAGAGGGGCACAGTGAGCATGAAAAACCTACAGATTCTGATGAGCAGGTAGACCTTGAAGGGGACAATGATCAAGAGGAGACCATGGAGGAAGAGGTTGAATATGAAGAAGTAGAGGAAGAAGTGGAAGAGGAAGAAGAGGAAGAAGAGGAGGAGGAGGAAGAAGAGGAAGAGACTAAACCCTCAGATGGTGAAGAGGATATAAGAGTGGTTGACACTAAGGATGAAGATGAGAAAAAGAAACATGCTGAACTTCTTGCACTTCCACCTCATGGGTCAGAGGTTTACATTGGTGGCTTTCCTAATAAAGTTTCAGAAGACGATTTGAGGGCATTCTGTGAATCTGTCGGAGAAGTGTCAGAGGTTAGGATTATGAAAGGAAAAGATTCAGGTGAAGCAAAAGGTTATGCATTTGTGACCTTCAAGTCAAAGGAATTGGCATCTATGGCTATTGAGAAGCTGAACAACACAGAATTTAAGGGAAGAAAAATAAGGTGCTCAACATCCCAAGCTAAGCATAAGTTGTTCATTGGTAATGTTCCTAGAAATTGGACTGTAGAAAATATGAAGAAGACAGTCTCAGAAATTNNNNNNNNNNGAGTTGTTGCTGTGGAACTGTTGAAGGACCCACAGATCTCTGGCCGTAATCGGGGCTTTGCTTTTATTGAGTATTACAATCATGCTTGTGCAGAATATTCAAGGCAGAAGATGTCAAACCCAAAATTCAAACTAGATGACAATGCTCCAACTGTGAGTTGGGCTGACCCAAGGAATTCTGAATCATCTGCTGCCACTCAGGTAAAAGCAGTTTATGTAAAGAACCTTCCAGAGAATATTACTCAGGATCGTCTTAAGGCACTATTTGAACATCACGGAAAGATCACAAAAGTGGTTGTCCCTCCCGCGAAAGCAGGACAAGAAAAGAGCAGGTTTGGGTTTGTGCACTTTGCTGAAAGGTCAAGTGCCATGAAAGCATTGAAGAATACTGAGAAGTATGAAATAGATGGCCAAACTTTGGAGTGTTCACTTGCAAAGCCGCAAGCAGATCAGAAGTCATCCAGTACACTAAATTCACAGAAGGCAGTTGCACTTCCCACTTATCCACCTCAACTTGGTTATGGCATGGTTGGAGGTGCCTATGGTGGTATTGGTGCCGGGTTTGGTCCTGCTGGGTTCGCACAACCACTGATGTATGGTGCAGGAGCAACCACGGCTGGCATGGCAATGATGCCAATGCTGTTACCAGATGGAAGGATTGGATATGTATTGCAACAGCCAGGGTTGCAATCACATACACCTCTTCCACCAGTATCCAGACACGGGAAGAGCAGTGGTGGTAGCTCAAGTAGTGGAAAACGTGGAAACGATAATAGCCATAGCCATAGCCATAGCCATAGCCGTGGACGTGGCCGTGGTCGGTATCATCCCTACTAA 1491 0.4413 MHKMPGTKQKDETAQNPESPEGHSEHEKPTDSDEQVDLEGDNDQEETMEEEVEYEEVEEEVEEEEEEEEEEEEEEEETKPSDGEEDIRVVDTKDEDEKKKHAELLALPPHGSEVYIGGFPNKVSEDDLRAFCESVGEVSEVRIMKGKDSGEAKGYAFVTFKSKELASMAIEKLNNTEFKGRKIRCSTSQAKHKLFIGNVPRNWTVENMKKTVSEIXXXXVVAVELLKDPQISGRNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNSESSAATQVKAVYVKNLPENITQDRLKALFEHHGKITKVVVPPAKAGQEKSRFGFVHFAERSSAMKALKNTEKYEIDGQTLECSLAKPQADQKSSSTLNSQKAVALPTYPPQLGYGMVGGAYGGIGAGFGPAGFAQPLMYGAGATTAGMAMMPMLLPDGRIGYVLQQPGLQSHTPLPPVSRHGKSSGGSSSSGKRGNDNSHSHSHSHSRGRGRGRYHPY 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121430g00005 496 MobiDBLite consensus disorder prediction 443 496 - -
Stsc121430g00005 496 MobiDBLite consensus disorder prediction 36 81 - -
Stsc121430g00005 496 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 8 486 - -
Stsc121430g00005 496 MobiDBLite consensus disorder prediction 82 99 - -
Stsc121430g00005 496 SUPERFAMILY RNA-binding domain, RBD 109 278 IPR035979 GO:0003676
Stsc121430g00005 496 CDD RRM_SF 114 186 - -
Stsc121430g00005 496 Coils Coil 44 79 - -
Stsc121430g00005 496 MobiDBLite consensus disorder prediction 460 474 - -
Stsc121430g00005 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Stsc121430g00005 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 365 IPR000504 GO:0003723
Stsc121430g00005 496 SMART rrm2_1 113 186 IPR003954 GO:0003676
Stsc121430g00005 496 SMART rrm2_1 288 361 IPR003954 GO:0003676
Stsc121430g00005 496 SUPERFAMILY RNA-binding domain, RBD 284 369 IPR035979 GO:0003676
Stsc121430g00005 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 275 IPR000504 GO:0003723
Stsc121430g00005 496 Gene3D - 276 397 IPR012677 -
Stsc121430g00005 496 Gene3D - 33 192 IPR012677 -
Stsc121430g00005 496 SMART rrm1_1 193 271 IPR000504 GO:0003723
Stsc121430g00005 496 SMART rrm1_1 113 186 IPR000504 GO:0003723
Stsc121430g00005 496 SMART rrm1_1 288 361 IPR000504 GO:0003723
Stsc121430g00005 496 Gene3D - 193 274 IPR012677 -
Stsc121430g00005 496 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 276 385 - -
Stsc121430g00005 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 289 358 IPR000504 GO:0003723
Stsc121430g00005 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Stsc121430g00005 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 261 IPR000504 GO:0003723
Stsc121430g00005 496 MobiDBLite consensus disorder prediction 1 99 - -
Stsc121430g00005 496 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121430g00005 Stsc-Chr121430 22698 27842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121430g00005 112 369 Eukaryotic Initiation Factors Gene Family AT1G71770 27.778 8.30e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121430g00005 K13161 - qsa:O6P43_005954 593.578