Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121428g00003 ATGAGTGATGGTGACACATTAGTTTCAGCTGATGAAACCTTTGCATTGGGATTCTTCAGCCCTGGAACTTCCAAGAACCGTTATGTTGGAATTTGGTATAACAAAGATCCAACAAAGGCAATAGTATGGGTTGCAAACAGAGAAAAACCCCTCACTCACTCATCAGGGGTTTTGAAGGTCAACAGCACTGGAATTCTAGTCCTTCTTGATAGTAATAATACTCTCATCTGGTCATCCAACACAACACGGTCCGCACAACATCCAGTTGCAAAGCTTTTGAATTCTGGGAACTTTGTTGTGCAGGATGACAGCAATAGCAACAGTGATTTTCTGTGGCAAAGTTTTGATTATCCAGGGAACACAATCTTGCCTGGACAGAAGTTTGGAAGAAACTTAACTACAGGACTGAATTGGTTGATAACATCATGGAAAAGCTCTGATGATCCTTCTCAGGGTAGCTTTAGTTATCAATTTGATATTGATGGATATCCACAATTCGTATTAAGAGAAGGTGCGGCGAAAAGATTTCGGTTTGGATCATGGAATGGTATTCAGTTTAGTGGGGCACCACAGTTGAAAAATGACTCTACATTTAGATTTATCATGATTTCTAATGAGGAAGAAGTATATTATGTATATTGGCTTGCTGATAGTTCAGTGCATCAAAGGCTGCAGGTAACGTCGGACGGATTCAGCAACCGGATGAGTTGGAGTGATGGAAGTTCAGGTTGGGGCACAGTTTCGCACTTACCGGTGGACGACTGTGATTATTATGGAAAATGTGGAGCATATGCTAGTTGTGATACAAACAGTTTTCCCATGTGTAATTGCTTGGATGGATTTGTGCAGAATACAACTGATCCATCAAGTGGTTGCGTTAGGAGAACTTCATTGAGTTGCAATAGTTCAGATGGGTTTGTGAAATTTTCGGGGCTAAAATTACCAGACACTGAAGGGACATTCTTTAATAGAAGCATGAGCCTTGAGGATTGTAGGATCTTGTGTTTGAACAATTGCTCTTGTATGGCTTATGCAGCTTTGGACGTTAGCAAAGGGCCAAATGGTTGTTTACTTTGGTTTGGTAATTTGATTGATATGAAAGTGTTGAGTGCATCAGATGACGATATTTATACAAGGATGGCAGGGAAAGATGTAGAAGCTATTGAACAAAGTAGATCACAGAAGTCCAAGAAACGGAAGCGAAAGGTTATCATTGCTGTAAGCTGTGTGTTGTCCTTTGGAATTTTGATCCTATGCTTGGCCTACATTATCTATAGATGGAAGATGAATCAGAAAGGAAAGATAAACGAAGAAAGTGAATCAGGTGCAATAAATAGTCACCACCATGATGAGAATGATCTGGAACTGCCCTTATTTGATATGTGCACAATTACTTCTGCAACAAGTAATTTTTCAAGTGATAACATACTAGGGACAGGTGGTTTTGGATCAGTTTATAAGGGTGTCTTGGAAGATGGACAGGAAGTAGCTGTGAAGAGACTTTCTAAGAATTCAAGCCAAGGACACCAAGAGTTCAAAAATGAAGTTTTGCATGTTGCCAAACTTCAGCACCGAAATTTGGTGAGGCTCTTAGGGTGCTGCATTCAAGCAGGGGAGAGAATGTTGGTTTATGAATTTATGCGCAACAAAAGCTTGGACTACTTCATATTTGATAGTGATAGGGGAAAGCTATTAGGCTGGCCAAAACGGTTCCATATCATCAATGGGATAGCTAGAGGTCTTCTGTATCTTCATCAAGATTCAAGGCATAGAATGGTTCATAGAGATCTTAAGGCCGGAAATGTTTTGTTAGATGACGAATTGAATCCTAGAATCTCAGACTTTGGACTAGCAAGAAGATTCGTCGGAAATGAAAACGAAGCAAACACAAAACTTATTGTTGGAACTTATGGTTATCTGTCACCGGAGTACATAGTTGATGGGTTATACTCAACAAAATCCGATGTCTATAGCTTCGGAGTATCGGTGTTAGAGATAGTTAGCGGGAAGAGAAACAGAGGATTCATTCATATTGATCACAACTTTAATCTTCTTGGACATGCATGGACACTTTTCACAGAAGGAAAATGCTTAGAACTAGTCGATGCATTGATCAAAGACTCAGTCGACTTGCCAGAAGTGCTAAGATCAATTCATGTTGGTCTACTATGCGTGCAACGAAATCCAGAAGATCGTCCAAGCATGTCTTATGTGCTTATGATGCTGAGTAGTGAGTGGGCATTGCCTCAGCCAAAGAAGCCAGGGTTTTTCATTGAGAGAGATGTGGTTGGTGAGAATTCTTCATCAAGCAAGAATGAACTATTATTATCGGTTAATGGTCTCACAGTTACTCAAGTCTGTCCAAGATAG 2370 0.4017 MSDGDTLVSADETFALGFFSPGTSKNRYVGIWYNKDPTKAIVWVANREKPLTHSSGVLKVNSTGILVLLDSNNTLIWSSNTTRSAQHPVAKLLNSGNFVVQDDSNSNSDFLWQSFDYPGNTILPGQKFGRNLTTGLNWLITSWKSSDDPSQGSFSYQFDIDGYPQFVLREGAAKRFRFGSWNGIQFSGAPQLKNDSTFRFIMISNEEEVYYVYWLADSSVHQRLQVTSDGFSNRMSWSDGSSGWGTVSHLPVDDCDYYGKCGAYASCDTNSFPMCNCLDGFVQNTTDPSSGCVRRTSLSCNSSDGFVKFSGLKLPDTEGTFFNRSMSLEDCRILCLNNCSCMAYAALDVSKGPNGCLLWFGNLIDMKVLSASDDDIYTRMAGKDVEAIEQSRSQKSKKRKRKVIIAVSCVLSFGILILCLAYIIYRWKMNQKGKINEESESGAINSHHHDENDLELPLFDMCTITSATSNFSSDNILGTGGFGSVYKGVLEDGQEVAVKRLSKNSSQGHQEFKNEVLHVAKLQHRNLVRLLGCCIQAGERMLVYEFMRNKSLDYFIFDSDRGKLLGWPKRFHIINGIARGLLYLHQDSRHRMVHRDLKAGNVLLDDELNPRISDFGLARRFVGNENEANTKLIVGTYGYLSPEYIVDGLYSTKSDVYSFGVSVLEIVSGKRNRGFIHIDHNFNLLGHAWTLFTEGKCLELVDALIKDSVDLPEVLRSIHVGLLCVQRNPEDRPSMSYVLMMLSSEWALPQPKKPGFFIERDVVGENSSSSKNELLLSVNGLTVTQVCPR 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121428g00003 789 CDD STKc_IRAK 477 742 - -
Stsc121428g00003 789 Pfam S-locus glycoprotein domain 176 284 IPR000858 GO:0048544
Stsc121428g00003 789 ProSitePatterns Serine/Threonine protein kinases active-site signature. 592 604 IPR008271 GO:0004672|GO:0006468
Stsc121428g00003 789 SMART ntp_6 301 380 IPR003609 -
Stsc121428g00003 789 Gene3D Hepatocyte Growth Factor 297 378 - -
Stsc121428g00003 789 Pfam Domain of unknown function (DUF3403) 743 789 IPR021820 GO:0004674
Stsc121428g00003 789 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 115 - -
Stsc121428g00003 789 CDD PAN_AP_plant 296 381 - -
Stsc121428g00003 789 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 4 733 - -
Stsc121428g00003 789 Gene3D Transferase(Phosphotransferase) domain 1 547 749 - -
Stsc121428g00003 789 SMART serkin_6 471 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121428g00003 789 ProSiteProfiles Bulb-type lectin domain profile. 1 113 IPR001480 -
Stsc121428g00003 789 ProSiteProfiles Protein kinase domain profile. 471 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121428g00003 789 SMART blect_4 2 118 IPR001480 -
Stsc121428g00003 789 PIRSF SRK 1 789 IPR024171 GO:0004674
Stsc121428g00003 789 SUPERFAMILY alpha-D-mannose-specific plant lectins 41 149 IPR036426 -
Stsc121428g00003 789 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 547 750 - -
Stsc121428g00003 789 Pfam Protein tyrosine and serine/threonine kinase 474 739 IPR001245 GO:0004672|GO:0006468
Stsc121428g00003 789 Gene3D Phosphorylase Kinase; domain 1 444 546 - -
Stsc121428g00003 789 CDD B_lectin 2 118 IPR001480 -
Stsc121428g00003 789 ProSitePatterns Protein kinases ATP-binding region signature. 477 499 IPR017441 GO:0005524
Stsc121428g00003 789 Gene3D - 1 115 IPR036426 -
Stsc121428g00003 789 Pfam PAN-like domain 300 366 IPR003609 -
Stsc121428g00003 789 ProSiteProfiles PAN/Apple domain profile. 300 381 IPR003609 -
Stsc121428g00003 789 SUPERFAMILY Protein kinase-like (PK-like) 449 742 IPR011009 -
Stsc121428g00003 789 Pfam D-mannose binding lectin 41 144 IPR001480 -
Stsc121428g00003 789 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 435 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121428g00003 Stsc-Chr121428 24576 27721 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121428g00003 414 789 Receptor kinase-like Gene Family AT3G45860 51.697 6.63e-117 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc121428g00003 PK_Tyr_Ser-Thr 6.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121428g00003 - - adu:107462379 1359.74