LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc121425g00003	ATGGCGAGCGGCACTCCACGGGAGGAGTACGTGTACATGGCAAAGCTAGCCGAGCAGGCGGAGCGCTACGAGGAGATGGTGGAGTACATGGAGAAGGTGTCTGCGGCCGCCACTGAGGGCGAGGAGTTGTCGGTGGAGGAGCGCAACCTGCTGTCCGTCGCATACAAGAATGTAATAGGTGCTCGCCGCGCATCGTGGCGCATTATTTCCTCCATTGAGCAGAAGGAGGAGAGCAAAGGGAACACAGAACATGTGGCTACCATTAAGGAATACCGCTCCAAGATAGAGACTGAGCTGGCAAATATCTGTGATGGAATTCTAAAGCTTTTGGATTCTCGCCTTGTGCCCTCAGCAACTTCCAGCGATTCCAAGGTGTTCTACTTTAAGATGAAGGGTGACTACCATCGATACCTTGCAGAGTTCAAGGCAGGTGCAGAACGCAAAGAGGCTGCGGAGAGCACCCTTGCGGCGTACCAATCTGCTCAGGATATTGCAAATGAGGAGTTGCCTCCAACTCACCCAATCAGGCTGGGTCTTGCTTTGAACTTCTCTGTCTTTTACTATGAGATTCTTAACTCTCCTGATAAAGCTTGTAGCCTTGCTAAACAGGCTTTTGACAAGGCAATTGCTGAGCTGGATACATTGGGAGAGGAATCATACAAAGATAGCACTTTGATCATGCAACTTCTTCGTGATAACCTCACCCTTTGGACTTCTGACACACAGGATGAAAATGCGGATGAAATTAAAGAAGCAGCACCAAAAAGTGAAGAACAACAATAG	783	0.493	MASGTPREEYVYMAKLAEQAERYEEMVEYMEKVSAAATEGEELSVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNTEHVATIKEYRSKIETELANICDGILKLLDSRLVPSATSSDSKVFYFKMKGDYHRYLAEFKAGAERKEAAESTLAAYQSAQDIANEELPPTHPIRLGLALNFSVFYYEILNSPDKACSLAKQAFDKAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDTQDENADEIKEAAPKSEEQQ	260

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc121425g00003	260	Coils	Coil	13	33	-	-
	Stsc121425g00003	260	Pfam	14-3-3 protein	13	238	IPR023410	-
	Stsc121425g00003	260	MobiDBLite	consensus disorder prediction	240	260	-	-
	Stsc121425g00003	260	SMART	1433_4	7	251	IPR023410	-
	Stsc121425g00003	260	MobiDBLite	consensus disorder prediction	243	260	-	-
	Stsc121425g00003	260	PRINTS	14-3-3 protein zeta signature	42	71	IPR000308	-
	Stsc121425g00003	260	PRINTS	14-3-3 protein zeta signature	211	240	IPR000308	-
	Stsc121425g00003	260	PRINTS	14-3-3 protein zeta signature	91	115	IPR000308	-
	Stsc121425g00003	260	PRINTS	14-3-3 protein zeta signature	184	210	IPR000308	-
	Stsc121425g00003	260	PRINTS	14-3-3 protein zeta signature	157	183	IPR000308	-
	Stsc121425g00003	260	PRINTS	14-3-3 protein zeta signature	122	144	IPR000308	-
	Stsc121425g00003	260	PIRSF	14-3-3	1	250	IPR000308	-
	Stsc121425g00003	260	PANTHER	14-3-3 PROTEIN	7	242	IPR000308	-
	Stsc121425g00003	260	Coils	Coil	148	168	-	-
	Stsc121425g00003	260	SUPERFAMILY	14-3-3 protein	7	240	IPR036815	-
	Stsc121425g00003	260	FunFam	14-3-3 protein epsilon	3	251	-	-
	Stsc121425g00003	260	ProSitePatterns	14-3-3 proteins signature 2.	220	239	IPR023409	-
	Stsc121425g00003	260	Gene3D	-	1	252	IPR036815	-
	Stsc121425g00003	260	ProSitePatterns	14-3-3 proteins signature 1.	48	58	IPR023409	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc121425g00003	Stsc-Chr121425	26889	29972	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc121425g00003	1	260	14-3-3 family	AT1G78300	85.496	8.15e-163	449

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc121425g00003	K06630		-	gmx:100794129	442.965