Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121424g00001 GAAATGATTTTTAGGGGAACCGACACGGTTTCTGTCTTGATAGAGTGGATACTAGCAAGAATGGTCCTTCATCCAGACTTGCAACGCAAGGTTCAAGATGAGCTGGACATTGTAATTGGCTCACGTGGCACTGTAATAGAGGATGACATGGCGGCGTTAGTGTACCTTCCCGCGGTGGTGAAGGAAGTTCTAAGGCTTCACCCTCCAGGTCCACTTCTTTCATGGGCCCGGTTGGCCATAACCGATACCACTATTGATGGATATCATGTGCCCAAAGGGACTACGGCTATGGTCAACATGTGGGCCATAGCTCGTGATCCGTCAATATGGAAGGAACCACTTGAATTTAAACCCGAGAGGTTTATTGAAAATGAAGGAGGTCTTGAGTTTTCTGTTTTCGGGTCGGATCTTAGACTTGCTCCGTTCGGATCTGGTCGACGAGTTTGCCCCGGGAAGACCTTAGGTCTAGCCACCGTGACATTTTGGGTGGCATCACTCTTGCACAAGTTTGAATGGCTACCTTTAGATGATGGAATGGATGGTGTTGATCTCTCAGAAGTTCTAAGGCTCTCATGTGAAATGGCCAAGCCTCTTACCGTTAAGGTTTGCCCTAGGCACAATGCTAGTACTATGAAGTCAAGTTAA 645 0.4744 EMIFRGTDTVSVLIEWILARMVLHPDLQRKVQDELDIVIGSRGTVIEDDMAALVYLPAVVKEVLRLHPPGPLLSWARLAITDTTIDGYHVPKGTTAMVNMWAIARDPSIWKEPLEFKPERFIENEGGLEFSVFGSDLRLAPFGSGRRVCPGKTLGLATVTFWVASLLHKFEWLPLDDGMDGVDLSEVLRLSCEMAKPLTVKVCPRHNASTMKSS 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121424g00001 214 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 142 151 IPR017972 GO:0005506|GO:0016705
Stsc121424g00001 214 PANTHER CYTOCHROME P450 78A7-RELATED 1 205 - -
Stsc121424g00001 214 SUPERFAMILY Cytochrome P450 2 205 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121424g00001 214 PRINTS E-class P450 group I signature 57 75 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121424g00001 214 PRINTS E-class P450 group I signature 99 123 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121424g00001 214 PRINTS E-class P450 group I signature 149 172 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121424g00001 214 PRINTS E-class P450 group I signature 14 40 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121424g00001 214 PRINTS E-class P450 group I signature 139 149 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121424g00001 214 Gene3D Cytochrome P450 1 213 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121424g00001 214 Pfam Cytochrome P450 1 178 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121424g00001 214 PRINTS P450 superfamily signature 5 22 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121424g00001 214 PRINTS P450 superfamily signature 58 69 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121424g00001 214 PRINTS P450 superfamily signature 140 149 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121424g00001 214 PRINTS P450 superfamily signature 149 160 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121424g00001 Stsc-Chr121424 537 1570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121424g00001 1 205 Cytochrome P450 AT1G01190 72.683 2.94e-106 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121424g00001 K20619 - twl:119983969 331.643