Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121420g00005 ATGTCTGCCACTGCAGCTTCTCTTGCTCTTCCAACCCTATCCCTCCGAACCCGCCAAACCCTTTCTTCTTCTTCTTCTCCTTCACACGCCTTCTCTTCTCTCGCCTTCAACCCCGCTAAATCCCTTTCCATTTCCACCACTTTCCTTCCACTTCCTCCAACCTTCGTCTCCTCCTCCCGCTTCCTTTCAAATGTCGCTCTTGACGACGACATTCTCACCGATGGAGATGACCGCACCTTCTCTCCTGACCTCAAGCTCTTCGTTGGCAACCTTCCTTTCTCCGTCGACAGCGCCCAACTCGCCGAGCTCTTTGAAACTGCTGGTACCGTTGAAGTCGTTGAGGTGATTTATGATAAGATGAGTGGAAGAAGCAGGGGCTTTGGTTTTGTGACCATGTCTTCCGTTGAGGAAGCTGAAGCTGCTAAACAACAATTCGATGGCTATGAGCTAGATGGGAGGGCACTGAGGGTGAATTCTGGACCACCTCCTGCTAAGAATGACGGTTCCCGCTTCAGATCTCCTTCCAGAGGTGGTTTTTCTTCTGACAATGGACACCGTGTTCATGTTGGTAATCTTGCGTGGGGTGTTGACCACTTGGCACTTGAGAACTTGTTTCGTGAACAAGGAAAAGTTTTGGAGGCAAAGGTAATCTATGACAGGGAAAGTGGGAGATCAAGAGGCTTTGGATTTGTGACCTACAGCAGCCCTGAAGAGGTCAACAGTGCTATTGAGTCCTTAGATGGCGCGGACTTGAATGGCAGATCTATTAGAGTTTCTTTAGCAGATTCTAAGCCAAAGCGCCCATTTTGA 810 0.4938 MSATAASLALPTLSLRTRQTLSSSSSPSHAFSSLAFNPAKSLSISTTFLPLPPTFVSSSRFLSNVALDDDILTDGDDRTFSPDLKLFVGNLPFSVDSAQLAELFETAGTVEVVEVIYDKMSGRSRGFGFVTMSSVEEAEAAKQQFDGYELDGRALRVNSGPPPAKNDGSRFRSPSRGGFSSDNGHRVHVGNLAWGVDHLALENLFREQGKVLEAKVIYDRESGRSRGFGFVTYSSPEEVNSAIESLDGADLNGRSIRVSLADSKPKRPF 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121420g00005 269 FunFam 28 kDa ribonucleoprotein, chloroplastic 178 267 - -
Stsc121420g00005 269 Gene3D - 73 182 IPR012677 -
Stsc121420g00005 269 Gene3D - 183 268 IPR012677 -
Stsc121420g00005 269 SMART rrm1_1 85 158 IPR000504 GO:0003723
Stsc121420g00005 269 SMART rrm1_1 186 259 IPR000504 GO:0003723
Stsc121420g00005 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 156 IPR000504 GO:0003723
Stsc121420g00005 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 257 IPR000504 GO:0003723
Stsc121420g00005 269 SUPERFAMILY RNA-binding domain, RBD 181 267 IPR035979 GO:0003676
Stsc121420g00005 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
Stsc121420g00005 269 CDD RRM2_NsCP33_like 186 261 - -
Stsc121420g00005 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 263 IPR000504 GO:0003723
Stsc121420g00005 269 PANTHER OS02G0815200 PROTEIN 41 264 - -
Stsc121420g00005 269 MobiDBLite consensus disorder prediction 157 183 - -
Stsc121420g00005 269 SUPERFAMILY RNA-binding domain, RBD 81 184 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121420g00005 Stsc-Chr121420 27537 29648 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121420g00005 86 267 Eukaryotic Initiation Factors Gene Family AT4G34110 25.946 1.21e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121420g00005 - - gmx:100786275 327.02