Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121420g00004 ATGGCTTCTGGTGGTATATCAAGATCTTCTGTAAGGTTTCATGATGTTGTTGAGACAGACAAGTTAACAGAAAGCATGGAAAAGATGGCCAAGAAAGAAAAATGCATTGACATGTCTATTGCTCTTGAGGTTTCCCTCACCATAATCCGGTCCATGGTTGATGCATTTTACATTATTCAGATTTATGTGAGGTTTCAAACTGCTTATGTCGCACCTTCTTCGCGTGTTTCTGGTAGAGGAGAGCTTATTATAGACTCTTCGAGGATCGCATCGCAGTATATGCGTAAGGACTTTTGGATTGATCTACTGGCTGCACAGCCACTTCCTCAGTACCTGTTGAGGCTATATCTGATTTATCCTCTTTCACATGAAATCATCAAGACTAAAGGGGTGATGATGGAGAAAGCTTGGGCTGGTGCAGCATATAATCTTATGCTCTATATGCTAGCAAGTCATGTTTTAGGATCATGCTGGTATCTGTTATCAATTGAAAGGCAAGATGAGTGTTGGAAGAAAGCTTGTAGTCTTCAATACCCAAAGTGCAAGTACCATTATCTTGAATGTCAAAGCATAAGGGACCCAAATAGGACTTCATGGCTAAAGTCAAGCAATATCTCAGGCCTGTGTGATCAGAACAGTGATTTCTTTCAGTTTGGCATTTTTGCTGATGCTCTTTCTTTGGAAGTAACAGCCTCGGAATTCTTCAGCAAATATTACTATTGTCTTTGGTGGGGACTGAGAAATCTTAGCTCTTTGGGACAGAATCTGTTAACAAGCACGCAAGTTACGGAGATAAATTTTGCTGTGATTGTTGCTATCCTTGGATTGGTGCTATTTGCATTGCTGATAGGAAATATGCAAACATATTTGCAATCAACAACAATGAGACTAGAAGAATGGAGAGTAAGGAGAACAGATACAGAAAGATGGATGCACCACAGGCAACTGCCTCGACATCTGAAGCAAAATGTGAGAAGGTATGACCAATTGAGATGGGTTGCCACTCGTGGTGTTGATGAAGAAGCCATTCTTAGAGACCTTCCTGCTGATCTTAGACGTGAAATTAAGCGTCACCTTTGTCTCAATCTTGTCCGCCAAGTACCATTGTTTGATCAGATGGATGAGAGAATCCTAGATGCAATATGTGAGAGACTAAAACCTTCACTGTGTTCTCAAGGGACGTGCCTTGTCCGAGAAGGTGACCTTGTCCATGACATGCTCTTCATAGTAAGAGGCCACTTAGACTCTTGCACCACCAATGGTGGCCGAACCGGCTTCTTCAACTCCTCTCGAATTGGGCCTGGTGACTTTTGCGGTGAGGAGCTTCTCACGTGGGCCTTGGACCCCCGTCCAACTGTGGCCCTTCCTTCGTCAACAAGAACAGTCAAGTCCATAACTGAAGTTGAGGCCTTTGCACTCGTTGCTGAGGACTTGAAATTTGTTGCAGCCCAATTCAGAAGGTTACATAGCAAACAGCTTAGGCACACTTTCAGGTTCCATTCTCATCAATGGAGAACATGGGCTGCCTGTTTTATTCAAGCAGCTTGGTTTAGGTATAAGAGGATGAAGGACACAAGTGAGCTCCATAGAAAGGAGAGTCCCATGATGCTGTTGATGGCCTGTGGGCCTGGAAATGGGCCTGAGCACTTCTCTGCACCCTTGCAGCCCATGACCGGATCAAGTTTTAGTATGTATTCATCAGCAAGCCCAAGGAGAGGGAGGAGCCTGAGACATGGGCCTGAGTTTGATATGTTTCTTGGGTCATTGAGGAAGCCCCTTGAACCAGACTTTGCAGAAGATGATGATGATGATGATAAGTGA 1821 0.4399 MASGGISRSSVRFHDVVETDKLTESMEKMAKKEKCIDMSIALEVSLTIIRSMVDAFYIIQIYVRFQTAYVAPSSRVSGRGELIIDSSRIASQYMRKDFWIDLLAAQPLPQYLLRLYLIYPLSHEIIKTKGVMMEKAWAGAAYNLMLYMLASHVLGSCWYLLSIERQDECWKKACSLQYPKCKYHYLECQSIRDPNRTSWLKSSNISGLCDQNSDFFQFGIFADALSLEVTASEFFSKYYYCLWWGLRNLSSLGQNLLTSTQVTEINFAVIVAILGLVLFALLIGNMQTYLQSTTMRLEEWRVRRTDTERWMHHRQLPRHLKQNVRRYDQLRWVATRGVDEEAILRDLPADLRREIKRHLCLNLVRQVPLFDQMDERILDAICERLKPSLCSQGTCLVREGDLVHDMLFIVRGHLDSCTTNGGRTGFFNSSRIGPGDFCGEELLTWALDPRPTVALPSSTRTVKSITEVEAFALVAEDLKFVAAQFRRLHSKQLRHTFRFHSHQWRTWAACFIQAAWFRYKRMKDTSELHRKESPMMLLMACGPGNGPEHFSAPLQPMTGSSFSMYSSASPRRGRSLRHGPEFDMFLGSLRKPLEPDFAEDDDDDDK 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121420g00004 606 Pfam Ion transport protein 45 296 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc121420g00004 606 PRINTS EAG/ELK/ERG potassium channel family signature 238 255 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc121420g00004 606 PRINTS EAG/ELK/ERG potassium channel family signature 61 70 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc121420g00004 606 PRINTS EAG/ELK/ERG potassium channel family signature 332 339 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc121420g00004 606 PRINTS EAG/ELK/ERG potassium channel family signature 264 275 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc121420g00004 606 PRINTS EAG/ELK/ERG potassium channel family signature 282 291 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc121420g00004 606 PRINTS EAG/ELK/ERG potassium channel family signature 149 159 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc121420g00004 606 SUPERFAMILY Voltage-gated potassium channels 38 291 - -
Stsc121420g00004 606 SUPERFAMILY cAMP-binding domain-like 299 491 IPR018490 -
Stsc121420g00004 606 FunFam Cyclic nucleotide-gated ion channel 1 367 485 - -
Stsc121420g00004 606 ProSiteProfiles cAMP/cGMP binding motif profile. 369 452 IPR000595 -
Stsc121420g00004 606 Gene3D - 32 293 - -
Stsc121420g00004 606 Gene3D Helix hairpin bin 296 360 - -
Stsc121420g00004 606 Gene3D Jelly Rolls 367 487 IPR014710 -
Stsc121420g00004 606 SMART cnmp_10 369 500 IPR000595 -
Stsc121420g00004 606 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 29 112 - -
Stsc121420g00004 606 CDD CAP_ED 369 500 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121420g00004 Stsc-Chr121420 23557 26368 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121420g00004 29 600 Ion Channels AT2G28260 60.899 0.0 755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121420g00004 K05391 - gmx:100815543 936.791