LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc121415g00002	ATGGAATTGACAAGACCTGGCTATGCCGTGATTTATGTCATTCTACTTTGCGCATTGGCACAAGGGGGCTCAGAGGGGAAGAGGGGCGAGGACGATGATTTTTCTTCATCGTACCTACTTGTACACCCATCAACAAAACAGGCAGAGATAGTGCCAAAACATAGAAAAGAATTGACAAAGAACATTCAAGCCAAAGATTTGGACTTAAATGCACAACAAAAGAACAATGACATTAGTCCCATACTTTTCACTGAAAACAACACAAATCAAGCAAACGAATCAAACCAAGCTATTGATCCACCACAGCCACAGCCATCGCCAGAACAACGATCTCATCGTCTGCTTGCTGTTTCTAGATCTCTATCAGAAAATGATACTGCAACTTCTTCACCACCTACCAAAAATGAAGATGACAAACAACCAAAAACAACGGTTCGTGGTGCGGCTGCTGTATCAGGAATTCTAATGGCACTAGGGGTGTCCTTTTGCTATCGTCAGGTCAAAACCAACAAAGATGAAAAAGAAGATGTACTTGTATTAACCTCAAAGGATTATACTGGAGGTTCACCAAAGGTGGTTCGTTTGGGAGATAACAAGGATAAGGAAGAAGAATCTGTTACTGATAATAATGAAAATAAAACTTCTGATAATGATCCTGTAAGTGGCTCTGTTGATAATAAGGATAAAGATAGCAACACTACCTCAGTGGTGGAGACAACAGCACCATTACAAGTTGTGGAACATGTAGTTGAACTATCACCTACCCCAGAGGCTCCACCACCTGCACCTTTATCAGCTCCACCACCTCCGCTGGTCCCACGGCCCCCTGCACCACTCCCCCCAACTGGTCATGGTCCGCCACCACCACCGCCTCCAAAGCTAGGTCAGGGACCTCGGCCGCCACCACCGCCTCCTAGAGGAGGTCGAGGAGCAAATCAACCTCCACCTGTTCCTTCAAGACCATTGTCTAAAAGATTCAGAAATGTAGCTAGACAAGATAGCTTTACTGAGGTCCCTGATCCTGCAAAGCCTAAACTAAAGCCATTTTTCTGGGATAAGGTTAATGCAAAATCTGATCAAACAATGGTGTGGCATAAAATCTGCGGAGGGTCATTTGTATTCGATGAGGAACAGATGGAGTTTTTATTTGGTTGCACGAACCAAAACAAAAATGACCGCAAAAAGGAAGCAGCACAAATTGATACAGCACAGCTTGTTCAGATTATTGACAAGAAAAAGGCACAGAATTTGTCAATTCTTTTGAAAGCTTTGAATGTTACAACAGAGGAAGTTGTTGATGCCATTAAAGAAGGAAATGAGCTTCCAATTGAGCTGATGCAGACACTGGTGAAGATGGCGCCGACAGCGGACGAGGAAACGAAGCTTAGGTTATATACAGGAAACCTTTCTGATCTTGGCCCTGCAGAGAGGTTTCTAAAAGTTTTGGGTGATATTCCATTCGCTTTCAAACGCTTTGAATGTTTGATTTTCTTGTCTACCCTTCAAGAAGAGTCCTCAAATATGAGGGAGTATTTTACAACATTAGAGGTTGCTTCCAACAAACTCGTAAAAAGTAGGCTGTTCTTGAAACTGCTAGAGGCAGTTCTTAAAACCGGCAACCGAATGAACGATGGAACATACCGTGGTGGCGCACAAGCATTCAAGCTGGACACACTCTTGAAGCTATCAGATGTGAAAGGAACAGATGGGAAGACAACGCTGCTTCACTTCGTGGTTCAAGAGATTATACGATCTGAGGGAGTTAGAGCTCTAAGGACAGCTAAAGAAAACGGAAGCATGTCAAACTTGGAAACAGGTGATTCTTCGGACGAAAACTACCGAAGCCTTGGCATTGAGGTAGTTTCAGGCCTAAGCACCGAGCTAATGGACGTTAGAAAGGCTGCCTTAATAGACGGCGACTTGATCAGTTCTACGGTGGCGAAACTCAACCACTCGCTTTCAAGGACTCAAGAGTTTCTTGACACTGAGATGAAGAACGTTGAAGAAGACGGCGAGTTCCGAGCTTGCATGGAGGGGTTTATGGAGAAGGCGAAAGCGGAAGTGGCTTGGTTGGTTGCAGAGGAGAAGAGGATAATGGGGCTTGTTAAGGGAACTGCAGATTATTTTCATGGAAATTCAGGGAAAGAAGAAGGGCTGAGATTGTTCTCAGTTGTGCGTGATTTCTTGTTCATATTGGATAAGGTGTGCAAGGAGGTGAAGGAAACAACCCTTAAAGAGGCAAAGATTAATGCTTCTCAAAAGAATAATAATAATACTAATACTAATACTAATAACAATAATGATGATAATAATACTAATAATAATGATAATGATAAAGAGTCTTCACAATCAGTGACGGCAGCGTCTTCCACCGGGGACGATCAACAGCAAAATTCGGGGCCTTCTGAAATTCATAGGAAATTGTTTCCTGCTATTGTCGAAAGGAGAATTGATGATGATGATGATGACGACTTTAGCTCTGATGATGATGATGACAACGATAATGACAAAATTGCTCCATAA	2523	0.4293	MELTRPGYAVIYVILLCALAQGGSEGKRGEDDDFSSSYLLVHPSTKQAEIVPKHRKELTKNIQAKDLDLNAQQKNNDISPILFTENNTNQANESNQAIDPPQPQPSPEQRSHRLLAVSRSLSENDTATSSPPTKNEDDKQPKTTVRGAAAVSGILMALGVSFCYRQVKTNKDEKEDVLVLTSKDYTGGSPKVVRLGDNKDKEEESVTDNNENKTSDNDPVSGSVDNKDKDSNTTSVVETTAPLQVVEHVVELSPTPEAPPPAPLSAPPPPLVPRPPAPLPPTGHGPPPPPPPKLGQGPRPPPPPPRGGRGANQPPPVPSRPLSKRFRNVARQDSFTEVPDPAKPKLKPFFWDKVNAKSDQTMVWHKICGGSFVFDEEQMEFLFGCTNQNKNDRKKEAAQIDTAQLVQIIDKKKAQNLSILLKALNVTTEEVVDAIKEGNELPIELMQTLVKMAPTADEETKLRLYTGNLSDLGPAERFLKVLGDIPFAFKRFECLIFLSTLQEESSNMREYFTTLEVASNKLVKSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGVRALRTAKENGSMSNLETGDSSDENYRSLGIEVVSGLSTELMDVRKAALIDGDLISSTVAKLNHSLSRTQEFLDTEMKNVEEDGEFRACMEGFMEKAKAEVAWLVAEEKRIMGLVKGTADYFHGNSGKEEGLRLFSVVRDFLFILDKVCKEVKETTLKEAKINASQKNNNNTNTNTNNNNDDNNTNNNDNDKESSQSVTAASSTGDDQQQNSGPSEIHRKLFPAIVERRIDDDDDDDFSSDDDDDNDNDKIAP	840

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc121415g00002	840	MobiDBLite	consensus disorder prediction	194	211	-	-
	Stsc121415g00002	840	MobiDBLite	consensus disorder prediction	817	840	-	-
	Stsc121415g00002	840	SMART	it6_source	336	747	IPR015425	-
	Stsc121415g00002	840	MobiDBLite	consensus disorder prediction	184	323	-	-
	Stsc121415g00002	840	MobiDBLite	consensus disorder prediction	750	803	-	-
	Stsc121415g00002	840	PANTHER	FORMIN-RELATED	73	816	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Stsc121415g00002	840	MobiDBLite	consensus disorder prediction	91	145	-	-
	Stsc121415g00002	840	MobiDBLite	consensus disorder prediction	750	840	-	-
	Stsc121415g00002	840	Pfam	Formin Homology 2 Domain	339	730	IPR015425	-
	Stsc121415g00002	840	MobiDBLite	consensus disorder prediction	254	321	-	-
	Stsc121415g00002	840	Coils	Coil	55	75	-	-
	Stsc121415g00002	840	Gene3D	Formin, FH2 domain	342	773	IPR042201	-
	Stsc121415g00002	840	MobiDBLite	consensus disorder prediction	108	134	-	-
	Stsc121415g00002	840	MobiDBLite	consensus disorder prediction	212	241	-	-
	Stsc121415g00002	840	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	336	758	IPR015425	-
	Stsc121415g00002	840	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	287	748	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc121415g00002	Stsc-Chr121415	14020	19172	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc121415g00002	340	818	FH2 protein (formin) Gene Family	AT5G54650	55.215	3.71e-169	511

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc121415g00002	-		-	ahf:112737572	838.18