Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121409g00004 ATGGCTTCATCAATACTTGGCCCCAAAGATATTGAGATGTTTGAAGGGCAAGCTCTATTGTATAACCACTGTTTTGCCTACATAGATTCAATGTGTCTTAAGTGGTGTGTGGAGCTCAACATAGCTGACATAATCCACAGCCATGGCCAACCCATTACCCTTCATAACTTGGTCTCAACCTTGCAAGTTCCATCATCCAAAGTTGGTGGTGTTCAAAGATTCATGCGTTACCTCGCACATAATGGGTTCTTTGAAATAGTAAAAATGGATGACGAAATGAACGAAGCATATGCTCTGAACAGTGTATCAAAGCTCCTTGTAAGTAGCAATGAGTATTGTTTATCTCCAATGATTAAGGCTGCCACTGATCCAGCTATGGCGGCTCCACTCAATCAATTGAAGGAATGGATTCATGAGGAAGATCTCTCACTATTTGGCACCGCCAAAGGAATGGAATTCTGGGAATTTCTCAACAAGAACCCTAAGTATCAGAATTTGTTCAATGAGGCAATGGCTTGTGACTCTAAGATGATAAACTTGGCATTAACAAGCTGCGGTTTTGTGTTTGAGGGGCTTGAATCCATCGTGGATGTTGGTGGTGGAGTTGGAACAACTGCTAAGATTATTAGTGAGGCATTTCCTAAGTTGAAATGCATAGTGTTTGATCTTCCTCAGGTTGTAGAAAATTTGTCACCAACTAATAATAATTTGAGCTTTGTTGGTGGTGACATGTTCAAATCTATTCCTAAAGCACATGCAATGTTACTCAAGAATGTTTTACATGATTGGGATGAGGAAAATTGTGTGAAGATATTGAGAAACTGTAAAGAAGCTATTTACAGAAATGGGAAAAAAGGAAAAGTGATTATTATAGAGTCTGTGATCAATGAAAAGAGGGACAAGCGTGAAATTACTGATATGAAGCTGAAATATGATATATACATGACAGTTAACAATGGAGCACAGAAAACTGAAGAAGAATTGAAAAGAATGTTTATAGAAGCAGGGTTTCAAGGGTACAAACTATTCCCTATAGCTGGAATTGTGTCACTTGTTGAGGTCTATCCTTAA 1071 0.3847 MASSILGPKDIEMFEGQALLYNHCFAYIDSMCLKWCVELNIADIIHSHGQPITLHNLVSTLQVPSSKVGGVQRFMRYLAHNGFFEIVKMDDEMNEAYALNSVSKLLVSSNEYCLSPMIKAATDPAMAAPLNQLKEWIHEEDLSLFGTAKGMEFWEFLNKNPKYQNLFNEAMACDSKMINLALTSCGFVFEGLESIVDVGGGVGTTAKIISEAFPKLKCIVFDLPQVVENLSPTNNNLSFVGGDMFKSIPKAHAMLLKNVLHDWDEENCVKILRNCKEAIYRNGKKGKVIIIESVINEKRDKREITDMKLKYDIYMTVNNGAQKTEEELKRMFIEAGFQGYKLFPIAGIVSLVEVYP 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121409g00004 356 CDD AdoMet_MTases 195 295 - -
Stsc121409g00004 356 FunFam O-methyltransferase ZRP4 108 356 - -
Stsc121409g00004 356 FunFam Coniferyl alcohol 9-O-methyltransferase 3 106 - -
Stsc121409g00004 356 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 356 IPR016461 GO:0008168
Stsc121409g00004 356 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
Stsc121409g00004 356 PANTHER O-METHYLTRANSFERASE 13 341 IPR016461 GO:0008168
Stsc121409g00004 356 SUPERFAMILY "Winged helix" DNA-binding domain 12 110 IPR036390 -
Stsc121409g00004 356 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 355 IPR029063 -
Stsc121409g00004 356 Gene3D Vaccinia Virus protein VP39 108 356 IPR029063 -
Stsc121409g00004 356 Pfam O-methyltransferase domain 132 338 IPR001077 GO:0008171
Stsc121409g00004 356 PIRSF O-mtase 1 356 IPR016461 GO:0008168
Stsc121409g00004 356 Gene3D - 2 106 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121409g00004 Stsc-Chr121409 27791 30303 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121409g00004 2 354 Monolignol Biosynthesis Gene Families AT5G54160 30.894 6.86e-48 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121409g00004 K22588 K13262 ag:AAC49926 444.121