Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121409g00003 ATGGATTTACTAAGTGAGTGCAAGGCAAGTGAGGTCCTTGAAGGGCAAGTTGTTGTGTACAAACACATATATGCTTACATAGATTCCATATGTCTCAAATGGTGTATTGAGCTCAACATACCTGACATTATCCACAACCATGGCCAACCTATTACCCTTCATGACTTAGTCTCAACCTTGCAAGTTCCACCGTCCAAAATCGACGGAGTTCGGCGCCTCATGCACTACCTTGCCCATCATGGATTCTTCCGCACAGTAAGAATCCATGATGACAACAATGATAATGAAGAAGAAAAGGAAGCATATGCTCTCACTATTGCTTCAAAGCTTCTTGTCAAAGGCACTCAACATTGTATAGCTCCAATGGTTAAGTGTGTTCTTGATCCCACTTTGTTAGGCACGTACCATTTTTTGGGAAAATGGAGTTTTGAAGAAAATCTAACTTTGGCTGAGGTTTCTCTAGGAACAAATGTTTGGGACTTTCTTAAGAAAAACCCTTCATATATGAGCTTATTCAATGAGTCACTGGCTAGTGACTCTCAAATGGTGAAGTTGGCATTGAAGGATCATAGTGATGTGTTTGAAGGATTGGAGTCAATTGTGGATGTTGGTGGTGGAAATGGAACAATGTCTAAGATCATCAATGAGATGTTTCCCCAATTGAAATGCATAGTGTTTGACCTTCCCCATGTTGTGGATAATTTGTTGGGAAATGATAATTTGAGCTTTGTTGGTGGAGATATGTTTCATTCTATCCCTCAGGCTGATGCTACTTTACTTAAGTGCGTTTTGCACGATTGGGACAATGAAAATTGTGTTAAAATATTAAAACAATGCAAGGATGCGATTTTAAATAATATTAAAGGAGGAAAAATAATTATCATAGATAATGTGATAAATGAAAAATGTGATGAGTATGAACGTACTCAAATGAAGCTAATGATGGATATCGTTGTTATGACAATTTTGAATGGGAAGGAGAGAAGCGAAGAAGAATGGAAGAAACTATTTTTGGAAGCTGGCTTTCAAGATTATAAAATATCTCCATTAACTGCATTTCATTCTCTTATAGAGGTTTATCTTTAG 1086 0.3729 MDLLSECKASEVLEGQVVVYKHIYAYIDSICLKWCIELNIPDIIHNHGQPITLHDLVSTLQVPPSKIDGVRRLMHYLAHHGFFRTVRIHDDNNDNEEEKEAYALTIASKLLVKGTQHCIAPMVKCVLDPTLLGTYHFLGKWSFEENLTLAEVSLGTNVWDFLKKNPSYMSLFNESLASDSQMVKLALKDHSDVFEGLESIVDVGGGNGTMSKIINEMFPQLKCIVFDLPHVVDNLLGNDNLSFVGGDMFHSIPQADATLLKCVLHDWDNENCVKILKQCKDAILNNIKGGKIIIIDNVINEKCDEYERTQMKLMMDIVVMTILNGKERSEEEWKKLFLEAGFQDYKISPLTAFHSLIEVYL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121409g00003 361 Gene3D Vaccinia Virus protein VP39 112 360 IPR029063 -
Stsc121409g00003 361 FunFam Coniferyl alcohol 9-O-methyltransferase 3 111 - -
Stsc121409g00003 361 PANTHER O-METHYLTRANSFERASE 16 346 IPR016461 GO:0008168
Stsc121409g00003 361 FunFam O-methyltransferase ZRP4 113 361 - -
Stsc121409g00003 361 Pfam Dimerisation domain 31 78 IPR012967 GO:0046983
Stsc121409g00003 361 Pfam O-methyltransferase domain 152 343 IPR001077 GO:0008171
Stsc121409g00003 361 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 117 360 IPR029063 -
Stsc121409g00003 361 PIRSF O-mtase 1 361 IPR016461 GO:0008168
Stsc121409g00003 361 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 361 IPR016461 GO:0008168
Stsc121409g00003 361 Gene3D - 5 111 IPR036388 -
Stsc121409g00003 361 SUPERFAMILY "Winged helix" DNA-binding domain 10 114 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121409g00003 Stsc-Chr121409 14293 15619 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121409g00003 14 347 Monolignol Biosynthesis Gene Families AT5G54160 26.686 1.52e-39 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121409g00003 K22588 K13262 gmx:100813225 438.728