Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121405g00002 ATGGAGGGTAGTAGAAGAACAAGCTCAAATTCAGAGCTGCCACCAGGGTTTAGGTTTCACCCAACTGATGAAGAACTAATTGTTCACTACCTTTGTAACCAAGCCACTTCAAAGCCTTGCCCTGCTTCCATCATCCCTGAAGTTGATATCTATAAGTTTGATCCATGGCAATTACCCGAGAAAACAAGCTTTGGAGAGAATGAATGGTACTTCTTTAGTCCAAGGGATAGGAAGTACCCAAATGGGGTTCGGCCGAATAGGGCAACGGTTTCAGGGTATTGGAAGGCAACTGGTACGGACAAAGCTATTCATAGTGGCTCTAAGCATGTTGGGGTCAAGAAAGCTTTGGTCTTTTATAAGGGTAGGCCACCAAAGGGTCTCAAGACTGGTTGGATCATGCATGAATATAGATTGGTTGGTTCAAGAAGACAACCTACTAAACAAATTGGATCCATGAGGCTTGATGACTGGGTGTTATGTAGGATCTACAAGAAGAGGAGCATGGCAAAATCAATGTTATTATTGGAGCCTAAAGAGGAATATCCAACAACAATCAATCATCATCATCTAACAACATCATCAAATGATGGAAACGATAATGATAATAATAATAACAATGGTGATGATGAGCAACAAGAAATGGTGATGAAATTCCCAAGGACATGTTCCCTTACACACCTTTTGGAAATGGACTACTTGGGCCCAATTTCACAGATACTATCTGATGGATCATATAACTCAACCTTTGATTTTCAACTAAGTAATGCCAATGTTGGGAATATGATTATGGACCCTTTTGCCAAACAACAACCTCAGATCCTTGAAATCCCTAACAAAAATAATTATTATGCTGTGGATTCAGGGAAGAACAACAACCACCTAGTGAAACAGAATAGCACCATAAACCCTACCATATTTGTGAACCAATTCTTTGATCATAGTGGTTAA 948 0.3987 MEGSRRTSSNSELPPGFRFHPTDEELIVHYLCNQATSKPCPASIIPEVDIYKFDPWQLPEKTSFGENEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKAIHSGSKHVGVKKALVFYKGRPPKGLKTGWIMHEYRLVGSRRQPTKQIGSMRLDDWVLCRIYKKRSMAKSMLLLEPKEEYPTTINHHHLTTSSNDGNDNDNNNNNGDDEQQEMVMKFPRTCSLTHLLEMDYLGPISQILSDGSYNSTFDFQLSNANVGNMIMDPFAKQQPQILEIPNKNNYYAVDSGKNNNHLVKQNSTINPTIFVNQFFDHSG 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121405g00002 315 Gene3D NAC domain 22 169 IPR036093 GO:0003677|GO:0006355
Stsc121405g00002 315 PANTHER NAC TRANSCRIPTION FACTOR 56 13 203 - -
Stsc121405g00002 315 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
Stsc121405g00002 315 MobiDBLite consensus disorder prediction 187 210 - -
Stsc121405g00002 315 FunFam NAC transcription factor 22 169 - -
Stsc121405g00002 315 ProSiteProfiles NAC domain profile. 13 165 IPR003441 GO:0003677|GO:0006355
Stsc121405g00002 315 Pfam No apical meristem (NAM) protein 14 138 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121405g00002 Stsc-Chr121405 10050 12081 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121405g00002 7 239 NAC Transcription Factor Family AT1G69490 69.099 8.95e-116 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc121405g00002 NAM 1.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121405g00002 - - adu:107489303 553.132