Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121399g00002 ATGGCTATCATCATCTTTCTCTTATCTATGATTGCTTCACAAACTACAGCAACCGCTGTTCATGTGCCTTTGAGTTCAGAAACTGATAGGCTAGCTTTGCTTGCTCTGAAGGACAAGTTTGCCAATGGTGATCGTGACGCTTTGCCATCATGGAATCACTCTCTCCATTTCTGTGAATGGCAGGGCGTTACATGCACTCGCCGCCACACAAGAGTCTTCACCTTGCAACTACAAAATCTAGACTTGGGCGGCACTCTTGCGCCTGCCTTAGGAAATCTAACCTTTCTTGCGGAGCTCAATCTTACTGACCTCAACTTGTACGGTCAGATTCCAGGAGAAATTGGACGTTTAAAGAGACTGCAAGTTCTTGTCTTGGCGCAGAATAATCTTCATGGTGAGATTCCAAGAGAAATTGGTCGTTTAAAACGGCTGTGGGTTCTTGATCTAAAGAAGAATAATCTAAAGGGTGAGATTCCTATGGAGCTGGCCAATTGCTCAAGTCTTGGAGAAATTGACTTCTGGGGAAACAATTTCACTGGGAAAGTTCCCTCATGGTTTGGATATATGATCCAGCTTACTGTGCTGGAGCTTGGAGAGAATGGTTTAGTTGGTAATATCCCACCAACATTGGGGAATCTCTCGTCAATAGTCACCTTGACACTTGCAGAAAATCACTTACAAGGAGATATAACTCATGATTTGGGTAGGTTGCTGAATTTGGAATGGATCTCATTGAATACCAATAATTTGTCAGGTCAGGTTCCTAACGCATTCTACAACCTTTCAAATCTTCAAGTTCTTGATATAAGTGACAATCAATTAGAGTTTGATATATCATTCAATAGCTTTAGAGGGCCAATTCCTCCTACTTGGGGAAGGTCAAAAGATCTTCACTTCTTTGGCATTAATAACAATAGTCTTATTGGAAGTGGAACAGCTCGGGATTTGGATTTCCTTTCCTCGTTAATCAATTGCACAAATTTGGCTATGTTGATTTTGCAAGGAAATAATCTAGGAGGTGTTTTGCCAGATCTCATAGGTAACCTCTCTATCAATCTGTATGCGCTTGATATGTCCAATAATAAAATATCTGGACGATTGCCTCAAGGAATTGGAAACCTATTTGGCTTAGGTTACCTTTTTATGGATGAAAATTTCCTTGAGGGAACTATTCCAGATTCGATTGGGAAGCTTCAAAATCTAGGAAGACTATCCTTGGATGAGAACAATCTATCAGGTAAGATTCCTATTGCCATAGGCAATCTCACTATGTTGTCAGAAGTTTATATGAGCTCAAATAAATTAGAAGGAAGCATTCCATTTACCTTGAGATACTGCACAAATATGCAGACATTCAGTTGTGGAGAAAACAATTTAACTGGTAGCATACCTAATCAAACCTTTGGTTATCTAGACGGTTTAGTTAATCTTGACTTAGCTGACAACTCCATTCATGGTCCCATCCCTCCAGATTTTGGTAACTTGAAGCATCTTTCAAAATTATATCTATATGCAAACAAGTTGTCAGGTGTCATTCCCGTCGAACTTGGTGCTTGTTCGGCGTTATTAGAGCTTTATTTAGATATCAACTTCTTCCATGAAAGTATACCCAAGTTTTTGGCCTCTTTAAAATCCCTTGAAATCTTAGAACTTTCCAACAATAGCTTCTCAGGAACAATTCCACATGAACTTGAGAACTTGACACTGTTGAATACTTTGAACCTTTCTTATAATCAGCTCTATGGCCCGGTTCCACTAGGAGGAGTCTTTAGTAACATCACAATAATGTCACTCGTTGGAAACAAGGATCTTTGTGGTGGGATACCTCAACTAAACTTCCCTCCATGTCCTACGTTCTCCTCAAACAAACACAAGGGGTCTCTCAAAAAGAAAATTATGCTCATCAGTGTAATTGGTGCACTTTTGATCTCTTTCCTGGTTTTGAGTATATATTGTCTTCGGAAGAAGCCCAAGAAGTTATCCTCTTCACCATCACTGGATCTAGAACATGGATACTTAAGGGTTTCTTATGGAGAGCTACACCAAGCAACAAATGGATTTTCTTCATCCAATTTAGTTGGCGCAGGAAGCTTTGGCTCTGTGTATAGAGGAACTCTTGTCCATTTTGAAAGACCTGTTGTTGTAAAAGTGTTGAAGCTTCAAACATATGGGGCATCGAAGAGTTTCATGGCCGAATGCAAAGCTCTGGGAAAACTCAAGCACAGAAACCTTGTCAACATATTGACTTGTTGTTCAAGTGTTGATTATAAAGGGGATGATTTCAAGGCCATAGTGTTTGAGTTCATGCCTAATGGGAGTCTAGAAACCTTGTTGCACAACACTATTGAAGATAGAGAGCCCACAAATCTGAGTCTCAACCTTTTACAAAGAGTAAATATTGCTCTTCACGTAGCTTTTGCATTGGATTATCTTCACAATGAATCAGAAGATGTTGTAGTTCATTGTGATATTAAGCCAAGCAATATTCTACTTGATGATGACATGGTTGCCCATTTGGGAGACTTTGGATTAGCTAGGCTCGTTCATGGTGCCGCAAGCCATTCTAGCAGTGATGGTAGTTCCTCTGTAATTAAGGGAACCATCGGATATGTTCCACCAGAGTATGGAGCAGGTGGGGCAGTATCAACAGAAGGAGACATGTATAGCTATGGAATTCTTCTTTTGGAGATGATCACTGCAAAGAAGCCAACTGATACCATGTTTGGCGAAGGTCTAAACCTTCGCAATTTCTGTAACATGGCAACGGCAGAAGGAATCATTGAGATTGTTGATTCGACATTGCTAACTCCGATTGATGAAGAAGAAAAGAGGACCATGCATCATCAAAATATTGAGGAGTGTTTAGTGTCCTTAGCTAGCATTGGAGTTGCATGTTCTCAAGAGTTTCCCACTCAACGGATGAACATTAAAGATGTGATCATGGAGCTTCATGCAATTAAACACAAACTGCTTCCATAG 2979 0.4015 MAIIIFLLSMIASQTTATAVHVPLSSETDRLALLALKDKFANGDRDALPSWNHSLHFCEWQGVTCTRRHTRVFTLQLQNLDLGGTLAPALGNLTFLAELNLTDLNLYGQIPGEIGRLKRLQVLVLAQNNLHGEIPREIGRLKRLWVLDLKKNNLKGEIPMELANCSSLGEIDFWGNNFTGKVPSWFGYMIQLTVLELGENGLVGNIPPTLGNLSSIVTLTLAENHLQGDITHDLGRLLNLEWISLNTNNLSGQVPNAFYNLSNLQVLDISDNQLEFDISFNSFRGPIPPTWGRSKDLHFFGINNNSLIGSGTARDLDFLSSLINCTNLAMLILQGNNLGGVLPDLIGNLSINLYALDMSNNKISGRLPQGIGNLFGLGYLFMDENFLEGTIPDSIGKLQNLGRLSLDENNLSGKIPIAIGNLTMLSEVYMSSNKLEGSIPFTLRYCTNMQTFSCGENNLTGSIPNQTFGYLDGLVNLDLADNSIHGPIPPDFGNLKHLSKLYLYANKLSGVIPVELGACSALLELYLDINFFHESIPKFLASLKSLEILELSNNSFSGTIPHELENLTLLNTLNLSYNQLYGPVPLGGVFSNITIMSLVGNKDLCGGIPQLNFPPCPTFSSNKHKGSLKKKIMLISVIGALLISFLVLSIYCLRKKPKKLSSSPSLDLEHGYLRVSYGELHQATNGFSSSNLVGAGSFGSVYRGTLVHFERPVVVKVLKLQTYGASKSFMAECKALGKLKHRNLVNILTCCSSVDYKGDDFKAIVFEFMPNGSLETLLHNTIEDREPTNLSLNLLQRVNIALHVAFALDYLHNESEDVVVHCDIKPSNILLDDDMVAHLGDFGLARLVHGAASHSSSDGSSSVIKGTIGYVPPEYGAGGAVSTEGDMYSYGILLLEMITAKKPTDTMFGEGLNLRNFCNMATAEGIIEIVDSTLLTPIDEEEKRTMHHQNIEECLVSLASIGVACSQEFPTQRMNIKDVIMELHAIKHKLLP 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121399g00002 992 FunFam LRR receptor-like serine/threonine-protein kinase EFR 314 623 - -
Stsc121399g00002 992 SUPERFAMILY Protein kinase-like (PK-like) 661 983 IPR011009 -
Stsc121399g00002 992 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 769 992 - -
Stsc121399g00002 992 Gene3D Ribonuclease Inhibitor 181 276 IPR032675 -
Stsc121399g00002 992 Gene3D Ribonuclease Inhibitor 28 180 IPR032675 -
Stsc121399g00002 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Stsc121399g00002 992 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 26 185 - -
Stsc121399g00002 992 SMART serkin_6 687 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121399g00002 992 ProSitePatterns Protein kinases ATP-binding region signature. 693 716 IPR017441 GO:0005524
Stsc121399g00002 992 Gene3D Phosphorylase Kinase; domain 1 650 768 - -
Stsc121399g00002 992 SMART LRR_typ_2 495 519 IPR003591 -
Stsc121399g00002 992 SMART LRR_typ_2 237 260 IPR003591 -
Stsc121399g00002 992 SMART LRR_typ_2 261 285 IPR003591 -
Stsc121399g00002 992 SMART LRR_typ_2 189 213 IPR003591 -
Stsc121399g00002 992 SMART LRR_typ_2 567 592 IPR003591 -
Stsc121399g00002 992 SMART LRR_typ_2 117 141 IPR003591 -
Stsc121399g00002 992 SMART LRR_typ_2 543 566 IPR003591 -
Stsc121399g00002 992 SMART LRR_typ_2 398 422 IPR003591 -
Stsc121399g00002 992 FunFam LRR receptor-like serine/threonine-protein kinase EFR 658 768 - -
Stsc121399g00002 992 PANTHER LEUCINE RICH REPEAT KINASE 2 321 987 - -
Stsc121399g00002 992 SUPERFAMILY L domain-like 26 275 - -
Stsc121399g00002 992 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Stsc121399g00002 992 FunFam Piriformospora indica-insensitive protein 2 186 280 - -
Stsc121399g00002 992 Pfam Leucine rich repeat 522 580 IPR001611 GO:0005515
Stsc121399g00002 992 SUPERFAMILY L domain-like 276 365 - -
Stsc121399g00002 992 SUPERFAMILY L domain-like 352 606 - -
Stsc121399g00002 992 Pfam Protein kinase domain 689 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121399g00002 992 Gene3D Transferase(Phosphotransferase) domain 1 769 990 - -
Stsc121399g00002 992 Gene3D Ribonuclease Inhibitor 277 616 IPR032675 -
Stsc121399g00002 992 ProSiteProfiles Protein kinase domain profile. 687 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121399g00002 Stsc-Chr121399 2687 6057 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121399g00002 24 991 Receptor kinase-like Gene Family AT3G47570 41.766 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc121399g00002 Pkinase 2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121399g00002 - - ahf:112766919 1157.51