Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121397g00001 ATGGATGAAGTGTTGTTTGATGAGGATGATTCATGGCGTCCTAGGTGTTATAATAATAAGAAAGGTCGGAACTTTGATGGTGATGATGAGGCAGATGGGTATCCATTGCAGAGTGATGAGTGTGTGGCAGTAATGGTGGAAAAGGAGTGTCAACACTGGCATGGTGGTGCCTCTTACTTTAACAGCTTACAAACTGGTGATTTGGATTTTGGGGCCAGAAATGAGGCCATTCATTGGATTGAAAAGGTTCGAGTGCATTTTGGTTTTGGACCTCTCACTGAATATCTGGCTATAAACTACTTGGATCGATTCCTTTCATCATATGAATTACCAAAGGGAAGAGCTTGGACATTGCAATTGTTGGCGGTGGCCTGTTTATCGATCGCGGCGAAAATGGATGAGACTGAAGTTCCTTTCACCCTTGATTTGCAGGTTGGTGAATCAAGGTTTGTATTCGAAGCGAAAACTATTCAGAGAATGGAGCTTTTAGTACTAAGCACATTGAGGTGGAGAATGAAAGCAATTACTCCATTCTCCTTCATTGATTATTTCCTTTCCAAGATTAATGATGATAATCAGAGTCCTTCATCATTAAGATCTTCGATTTCGCGATCCATCCAGCTTATCTTGAGCACTGCCAGAGGGATTGAGTTCTTGGAGTTCAAGCCGTCCGAGATTGCGGCAGCAGTGGCAATATCTGTTACCGGGGAAACCGAAACAGTTGACACTGAGAAAGCTACTTCTGTTCTGATTCAACACATAGAAAAGGAGAGAGTGATTAAGTGTGTTGAATTGATCAAGGAACTTTCATTGAACATTGTGAATGTGAATAATCAAAATGGTGGTTTTTCTTCAGTCCCATGTGGTGTGCCTCAAAGTCCAATAGGAGTGTTAGATGCGTTGTGCTTCAGCTACAAAAGTGATGAATCAAATGCTGGTTCATGTGCAAGTTCTTCACATACAACTCCAGATCCTAAAAGGAGGAAGCTAAACAAAACTTGTGGATCAGAGGCACAATTGTAG 1023 0.4164 MDEVLFDEDDSWRPRCYNNKKGRNFDGDDEADGYPLQSDECVAVMVEKECQHWHGGASYFNSLQTGDLDFGARNEAIHWIEKVRVHFGFGPLTEYLAINYLDRFLSSYELPKGRAWTLQLLAVACLSIAAKMDETEVPFTLDLQVGESRFVFEAKTIQRMELLVLSTLRWRMKAITPFSFIDYFLSKINDDNQSPSSLRSSISRSIQLILSTARGIEFLEFKPSEIAAAVAISVTGETETVDTEKATSVLIQHIEKERVIKCVELIKELSLNIVNVNNQNGGFSSVPCGVPQSPIGVLDALCFSYKSDESNAGSCASSSHTTPDPKRRKLNKTCGSEAQL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121397g00001 340 Pfam Cyclin, N-terminal domain 43 172 IPR006671 -
Stsc121397g00001 340 Pfam Cyclin, C-terminal domain 175 276 IPR004367 -
Stsc121397g00001 340 FunFam D6-type cyclin 170 264 - -
Stsc121397g00001 340 Gene3D - 174 265 - -
Stsc121397g00001 340 CDD CYCLIN_AtCycD-like_rpt2 175 266 - -
Stsc121397g00001 340 MobiDBLite consensus disorder prediction 309 340 - -
Stsc121397g00001 340 PANTHER CYCLINS 39 268 IPR039361 -
Stsc121397g00001 340 SUPERFAMILY Cyclin-like 36 172 IPR036915 -
Stsc121397g00001 340 SMART cyclin_7 78 166 IPR013763 -
Stsc121397g00001 340 FunFam D2/4-type cyclin 56 169 - -
Stsc121397g00001 340 CDD CYCLIN_AtCycD-like_rpt1 72 170 - -
Stsc121397g00001 340 Gene3D - 56 173 - -
Stsc121397g00001 340 SMART Cyclin_C_2 175 304 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121397g00001 Stsc-Chr121397 15799 18562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121397g00001 56 316 Core Cell Cycle Gene Families AT2G22490 50.943 2.53e-80 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121397g00001 K18810 - gmx:547739 431.795