Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121381g00002 ATGGGTTCTAGCGAGTTGGGCTGCACCTACGCCTCTTTGATTCTCCATGACGAAGATATCCCAATCACCGCGGAGAAGATTAACACTTTGTTGAAAGCTGCTAATGTTACAGTTGAGGCATTCTGGCCCAGCCTCTTCGCTAAGCTTGCTCAGAAGAGGAACATCGAGGATCTTGTCTTGAATGCCGGATCTGGTGGTGGTGGTGCCGTCGCCGTCGCAGCTCCTGCTGGTGGTGCCGCCGCCGGTGGTGCTGCTGAAGCCGCACCTGCCAAGGAGGAGAAGAAGGAGGAGCCCAAGGAAGAGAGTGACGATGACATGGGTTTCAGCTTGTTTGATTAG 339 0.5428 MGSSELGCTYASLILHDEDIPITAEKINTLLKAANVTVEAFWPSLFAKLAQKRNIEDLVLNAGSGGGGAVAVAAPAGGAAAGGAAEAAPAKEEKKEEPKEESDDDMGFSLFD 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121381g00002 112 FunFam 60S acidic ribosomal protein P1 1 63 - -
Stsc121381g00002 112 MobiDBLite consensus disorder prediction 88 106 - -
Stsc121381g00002 112 CDD Ribosomal_P1 5 61 - -
Stsc121381g00002 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 112 - -
Stsc121381g00002 112 Pfam 60s Acidic ribosomal protein 22 111 - -
Stsc121381g00002 112 Hamap 50S ribosomal protein L12 [rpl12]. 6 112 IPR027534 GO:0003735|GO:0005840|GO:0006414
Stsc121381g00002 112 Gene3D - 2 63 IPR038716 -
Stsc121381g00002 112 MobiDBLite consensus disorder prediction 82 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121381g00002 Stsc-Chr121381 22817 24538 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121381g00002 1 112 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 56.522 2.24e-38 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121381g00002 K02942 - sly:101249479 124.405