LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc121379g00007	ATGCCGGCCTGGTGGAGTAGAAAATCCTGCAAGAACAAACAGCACAAGCAGGGCGACGCTGAAGACGATGAAGACACACGTGGCAGGCACAAACTCAATCTCATGGGATCGCCGATTAGCATTATCAGCAGCAGGAAGAAAGGCAAGGACAAGGAAAAGAACAACAACAACAACAACAAGAGCTTCGACGAGCTCTTCGTCTCTCGCAAGGAATTCTCCAGCGTCGACGGTAACAGCAGCAGCAGAGACCCAGACCAAGGGCTTCCGTTGCCTCGCCCTTCCGTTTCGGCCAATCACAGCTTCAGTAACGATCAGGGCCTCGTCTTTGGATCTGCTTCTCTATCTGGTTCCAGCCTCAGCTCCTCCACTTCTTGCGATGAAAACCCTATATCTCCTCAATTCCTCAACAACAGAGGACAAGGTGACATCAAATTCCATGGGAGGCCAAAGAGCCCAGGTACTGGGTCAAGGGGACCAACGAGCCCTACATCGCCACTTCATCAGAGAATTTTGAGTCTTGACTCTCCTACAGGCAAGCAAGAGGATGGAAAAAGCGAATGTCATCCGTTGCCTCTTCCCCCCGGCTCTCCTACTAGTCCTTCCACCCTTTCCACCCCGCGTGCAAGCGGGTCCTTTGAAAACATTGCCAATAATCTATCCAAGTGGAAGAAAGGAAAGCTTCTAGGAAGGGGAACTTTCGGGCATGTTTATCTTGGATTCAATAGTGAGAGTGGACAAATGTGTGCAATAAAAGAAGTAAGGGTTGTCTCTGATGATCCAACATCAAAAGAGTGCCTCAGACAACTTAACCAGGAGATAAACTTGCTTCACCAGCTTTCACATCCAAATATTGTTCAATACTATGGGAGTGAACTGGGTGAAGAAACACTTTCAGTTTATTTGGAATATGTCTCTGGTGGTTCTATCCATAAATTGCTTCAGGAATATGGTTCATTTAAGGAGCCCGTCATTCAAAATTATACCCGGCAGATTGTATCTGGACTTGCATATTTGCATGCGAGAAATACAGTACACAGGGATATCAAAGGAGCTAACATACTTGTTGATCCTAATGGTGAAATCAAGCTGGCAGACTTTGGAATGGCTAAACTTATAAATTCTGCTGCCTCAGTACTTTCATTCAAGGGAAGTCCATACTGGATGGCACCCGAGGTTGTAATGAATACCAATGGCTATGGTCTTCCGGTTGATATATGGAGCTTGGGATGCACAATTCTTGAAATGGCAACATCGAAGCCTCCATGGAGTCAATACGAAGGGGTAGCTGCCATATTTAAAATTGGGAACAGCAAAGATATGCCTGACATCCCTGAGCATCTTTCAGATGATGCCAAAAGCTTCATTAAGCTATGTTTAAATAGGGATCCATTAGCACGCCCAACAGCTCAAATGCTACTAGACCACNNNNNNNNNNGCTGTAAATGTCAGCATAACAAGAGATGCTTTCCCCCGCATGTTAGATGGAAGCCGGACGCCGCCTGTTTTGGAGCATCAATCCAATAG	1524	0.46	MPAWWSRKSCKNKQHKQGDAEDDEDTRGRHKLNLMGSPISIISSRKKGKDKEKNNNNNNKSFDELFVSRKEFSSVDGNSSSRDPDQGLPLPRPSVSANHSFSNDQGLVFGSASLSGSSLSSSTSCDENPISPQFLNNRGQGDIKFHGRPKSPGTGSRGPTSPTSPLHQRILSLDSPTGKQEDGKSECHPLPLPPGSPTSPSTLSTPRASGSFENIANNLSKWKKGKLLGRGTFGHVYLGFNSESGQMCAIKEVRVVSDDPTSKECLRQLNQEINLLHQLSHPNIVQYYGSELGEETLSVYLEYVSGGSIHKLLQEYGSFKEPVIQNYTRQIVSGLAYLHARNTVHRDIKGANILVDPNGEIKLADFGMAKLINSAASVLSFKGSPYWMAPEVVMNTNGYGLPVDIWSLGCTILEMATSKPPWSQYEGVAAIFKIGNSKDMPDIPEHLSDDAKSFIKLCLNRDPLARPTAQMLLDHXXXXCKCQHNKRCFPPHVRWKPDAACFGASIQ	507

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Stsc121379g00007	507	MobiDBLite	consensus disorder prediction	93	138	-	-
Stsc121379g00007	507	ProSitePatterns	Protein kinases ATP-binding region signature.	228	251	IPR017441	GO:0005524
Stsc121379g00007	507	MobiDBLite	consensus disorder prediction	44	70	-	-
Stsc121379g00007	507	Gene3D	Transferase(Phosphotransferase) domain 1	219	491	-	-
Stsc121379g00007	507	FunFam	Mitogen-activated protein kinase kinase kinase	220	494	-	-
Stsc121379g00007	507	SUPERFAMILY	Protein kinase-like (PK-like)	199	482	IPR011009	-
Stsc121379g00007	507	MobiDBLite	consensus disorder prediction	12	31	-	-
Stsc121379g00007	507	MobiDBLite	consensus disorder prediction	154	175	-	-
Stsc121379g00007	507	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	30	476	-	-
Stsc121379g00007	507	MobiDBLite	consensus disorder prediction	1	210	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc121379g00007	Stsc-Chr121379	20413	25133	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc121379g00007	1	475	MAP Kinase Kinase Kinase	AT1G53570	59.754	0.0	518

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Stsc121379g00007		Pkinase	3e-72	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc121379g00007	K04421		-	qsa:O6P43_030333	612.453

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