Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121379g00001 ATGAATCTTCCTCCAGGATTTTGCTTCTCTCCAACAGATGAAGAACTCATCCTTCACTTTCTCTATTCCAAAATTTCTCTACCATTCCACCCCAACATCATACCGGAACTTGATCCCTCTCACCTTCATCCATGGCAATTAAATGGGAAGGCGTTTTCAAGTGGGAATCAACACTATTTCTTCAGCAATAATAAAGTGAGGGAAAACAGAAGCACAGGAAATGGGTATTGGAAGGAAATAGGTTTGAGCCAACCTATAATCTCATCAGCTGATGCAAACAAGAAATTGGGAATCAAGAAGTATTTTGTCTTCAATCTTAGTGAAGGCACTGAAACCAATTGGGTCATGCAAGAATACCATATTTCCTCATCTATGCTCCACAACAACAACCCTAGTGCATGTTATTATGCAAATGGAACTGCTAATCGAAGATTAAAGAATGATCAAAATAGGAGCAACAATAAATGGGTTGTGTGCAGAGTGTATGAGAAGAACAAGAAGTCAGAATCTGAAGAAGGTGCAACTTCAAAGTACTACTATAGCGATGAGGATGATTGTGGATCAGAACTTTCATACCTAGATGAGGTTTATCTGTCACTTGATGATGATCTTGAAGTCATAAGCCCCCCTAATTAA 636 0.3884 MNLPPGFCFSPTDEELILHFLYSKISLPFHPNIIPELDPSHLHPWQLNGKAFSSGNQHYFFSNNKVRENRSTGNGYWKEIGLSQPIISSADANKKLGIKKYFVFNLSEGTETNWVMQEYHISSSMLHNNNPSACYYANGTANRRLKNDQNRSNNKWVVCRVYEKNKKSESEEGATSKYYYSDEDDCGSELSYLDEVYLSLDDDLEVISPPN 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121379g00001 211 Pfam No apical meristem (NAM) protein 4 121 IPR003441 GO:0003677|GO:0006355
Stsc121379g00001 211 Gene3D NAC domain 12 170 IPR036093 GO:0003677|GO:0006355
Stsc121379g00001 211 ProSiteProfiles NAC domain profile. 3 164 IPR003441 GO:0003677|GO:0006355
Stsc121379g00001 211 SUPERFAMILY NAC domain 1 164 IPR036093 GO:0003677|GO:0006355
Stsc121379g00001 211 PANTHER NAC TRANSCRIPTION FACTOR 56 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121379g00001 Stsc-Chr121379 457 1551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121379g00001 7 169 NAC Transcription Factor Family AT3G15510 37.572 5.89e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc121379g00001 NAM 6.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121379g00001 - - aip:107634622 355.91