Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121373g00008 ATGGAATTTAGTGGTTGTTCTACTCTGACAGAGCTCACACTAGGAAGAAACTCGTTTCATGGAAGTATTCCTTCATTCGTGGGATCTCTACTATCCCTTGAAATCTTAGACCTTTCTAATAACAACTTCTCAAGCACAATTCTGCATGAACTTGTGAGCCTCACGCTGTTGAGATCTTTGAACTTATCTTTCAACCATCTCTCTGGTGAAGTCCCGATAGGAGGGGTATTTAATAATGCCACAGCAATATTACTCACTGGAAACAAACATCTTTGTGGTGGGATACCTCAGTTGAATCTTCCTGCATTCCCTGCATTGCCTTTACAGAAGAAACACAAGAGATCTATTAAGAAGAGAGTCATACTCGCCATTGCATTTGGAGGGGTTCTAATCACTTTTGTAACTCTTTTCAGTATATATCTTCTCAAGAAAAAGGCAAAAAAGTTATCCATTAAATCCCTAGCTTTGCAATATGGTTATGTGAAGGTTTCCTATGGAGAGCTACATCAAGCAACCAATGGATTTTCTTCATCCAATTTAGCTGGTATAGGAAACTTTGGTACTGTGTATAGAGGAGCCCTTGTTCATTTTGAGAGACCTGTAGCTATGAAGGTGTTGAATCTTCAAGCATGTGGGGCATCAAAGAGTTTCGTGGCTGAATGCAAAGCTCTAGGAAAAATCAAGCACAGAAACCTTCTAAGCATACTAACTTGTTGTTCAAGTGTTAATTACAAAGGGAATGATTTCAAGGCCATAAGGGTAAATATTGCTCTTGATGTCGCTTTTGCATTGGATTATCTTCACAATGATTTAGGGGAAGCTATAATTCACTGTGATGTTAAGCCAAGTAATGTTCTGCTTGATGATGAACTTGTTGCTCACTTGGGAGACTTTGGATTAGCTAGACTCATTCATGGTCCTTCAAGCCCTTCTAGTAGTGGTCAAGCAAGCTCCTCTGCAATTAAGGGAACCATTGGATATATTCCACCAGAGTATGGAGGAAGTGGGTCAGTGTCAACAGAAGGAGACATGTATAGCTATGGAATTCTTCTTTTGGAGATGCTCACCGCAAAGAAGCCAACTGATAGCATTTTTGGCGAAGGTCTGGCCCTTCGCAATTCCTGTAACATGGCAACAGCAGAAGGAATCATTGAGATTGTTGATTCAAGATTGCTCATTCCAATTGATGAACAAGATCAAGCAAGAAGGGTCATCACAGGGCAGCAAAACATGGAAGACACCATTGGAGAGTGTCTTGCATCGTTTGCTAGGATTGGAATTGCATGTTCTGAAGAATCTGCCTCTCAACGAATGGGCATAAAAGATGTGATAATGGAGTTACATGCAATTAAACGGAAGCTGCTTTCATAA 1371 0.4041 MEFSGCSTLTELTLGRNSFHGSIPSFVGSLLSLEILDLSNNNFSSTILHELVSLTLLRSLNLSFNHLSGEVPIGGVFNNATAILLTGNKHLCGGIPQLNLPAFPALPLQKKHKRSIKKRVILAIAFGGVLITFVTLFSIYLLKKKAKKLSIKSLALQYGYVKVSYGELHQATNGFSSSNLAGIGNFGTVYRGALVHFERPVAMKVLNLQACGASKSFVAECKALGKIKHRNLLSILTCCSSVNYKGNDFKAIRVNIALDVAFALDYLHNDLGEAIIHCDVKPSNVLLDDELVAHLGDFGLARLIHGPSSPSSSGQASSSAIKGTIGYIPPEYGGSGSVSTEGDMYSYGILLLEMLTAKKPTDSIFGEGLALRNSCNMATAEGIIEIVDSRLLIPIDEQDQARRVITGQQNMEDTIGECLASFARIGIACSEESASQRMGIKDVIMELHAIKRKLLS 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121373g00008 456 SUPERFAMILY Protein kinase-like (PK-like) 157 449 IPR011009 -
Stsc121373g00008 456 SMART serkin_6 175 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121373g00008 456 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 227 456 - -
Stsc121373g00008 456 Pfam Protein kinase domain 180 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121373g00008 456 SUPERFAMILY L domain-like 2 92 - -
Stsc121373g00008 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672|GO:0006468
Stsc121373g00008 456 Gene3D Ribonuclease Inhibitor 1 105 IPR032675 -
Stsc121373g00008 456 PANTHER OS04G0122200 PROTEIN 5 454 - -
Stsc121373g00008 456 Pfam Leucine rich repeat 8 67 IPR001611 GO:0005515
Stsc121373g00008 456 ProSiteProfiles Protein kinase domain profile. 175 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121373g00008 456 ProSiteProfiles Leucine-rich repeat profile. 32 55 IPR001611 GO:0005515
Stsc121373g00008 456 Gene3D Transferase(Phosphotransferase) domain 1 246 455 - -
Stsc121373g00008 456 Gene3D Phosphorylase Kinase; domain 1 137 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121373g00008 Stsc-Chr121373 34315 36030 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121373g00008 6 72 Receptor kinase-like Gene Family AT3G47570 46.269 4.00e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc121373g00008 Pkinase 3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121373g00008 - - ahf:112766919 641.343