Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121373g00007 ATGATTGCTTCACAAACTACAACAAGCGCTGTTCATGTGCCTTTGAGTTCAGAAACAGATAGGCTAGCTTTGCTTGCTCTGAAGGACAAGTTTGCCAATGGTGATGGTGGCGCTTTGCCATCATGGAATCACTCTCTCCATTTCTGTGAATGGCAGGGCGTTACATGCACTCGCCGCCACAAAAGAGTCTTCACCTTGCAACTACAAAATCTAGACTTGGGCGGCACTCTTGCGCCAGCCTTAGGAAATCTAACCTTTCTTGCGGAGCTCAATCTTACTGACCTCAACTTGTACGGTCAGATTCCAGGAGAAATTGGACGTTTAAAGAGACTGCAAGTTCTTGTCTTGGCGCAGAATAATCTTCATGGTGAGATTCCAAGAGAAATTGGTCGTTTAAAACGGCTGCAGGCTCTTGATCTAAGGAAGAATAATCTAAAGGGTGAGATTCCTATGGAGCTGGCAAATTGCTCAAATCTTCGAGAAATTGACTTCTGGGGAAACAATTTCACTGGGAAAGTTCCCTCATGGTTTGGATATATGATCCAGCTTACTATGCTGGAGCTTGGAGAGAATGGTTTAGTTGGTAATATCCCACCAACATTGGGGAATCTCTCATCAATAGTCACCTTGTCACTTGCAGAAAATCACTTACAAGGAGATATAACTCATGATTTGGGTAGCTTTAGAGGGCCAATTCCTCCTACTTGGGGAAGGTCAAAAGATCTTCACTTCTTTGGCATTAATAACAATAGTCTTATTGGAAGTGGAACAGCTCGGGATTTGGATTTCCTTTCCTCGTTAATCAATTGCACAAATTTGGCAATGTTGATCTTGCAAGGAAATAATCTAGGAGGTGTTTTGCCAGATCTCATAGGTAACCTCTCTATCAATCTCTATGCGCTTGATATGTCCAATAATAAAATATCTGGACGGTTGCCTCAAGGAATTGGAAACCTATTTGGCTTAGGTTACCTTTTTTTGAATGAAAATTTCCTTGAGGGAACTATTCCAGATTCGATTGGGAAGCTTCAAAATCTAGGAAGACTATCCTTGGATGAGAACAATCTGTCAGGTAAGATTCCTATTGCCATAGGCAATCTCACTATGTTGTCAGAAGTTTATATGAGCTCAAATAAATTAGAAGGAAGCATTCCATTCACCTTGGGATACTGCACAAATATGCAGACATTCAGTTGTGGAGAAAACAATTTAACTGGTAGCATACCTAATCAAACCTTTGGTTATCTAGAAGGTTTAGTTAATCTTGACTTAGCTGACAACTCCATTCATGGTCCCATCCCTCCAGATTTTGGTAACTTGAAGCATCTTTCAAAATTATATCTATATGCAAACAAGTTGTCAGGTGTCATTCCAGTGGAACTTAGTGATTGTTCGGCGTTATTAGAGCTTTATTTAGATATCAACTTCTTCAATGGAAGTATACCCAAGTTCTTGGCCTCTTTAAAATCACTTGAAATCTTAGAACTTTCCAACAATAGCTTCTCAGGAACAATTCCACATGAACTTGAGAACTTGACACTGTTGAATACTTTGAACCTTTCTTATAATCAGCTCTATGGCCCGGTTCCACTAGGAGGAGTCTTTAGTAACATCACAATAATGTCACTCGTTGGAAACAAGGATCTTTGTGGTGGGATACCTCAACTAAACTTCCCTCCATGTCCTACGCTCTCCTCAAACAAACACAAGGGGTCTCTCAAAAAGAAAATTATGCTCATCAGTGTAATTGGTGCACTTTTGATCCCTTTCTTGATTTTTACTAGTATATATTGTCTTCGGAAGAAGCCCAAGAAGTTACCCTCTTCACCATCACTGGATCTAGAACATGGATACTTAAGGGTTTCTTATGGAGAGCTACACCAAGCAACCAATGGATTTTCTTCATCCAATTTAGTTGGCACAGGAAACTTTGGTACTGTGTACAGAGGAAACCTTGTTCATTTTGAGAGACCTGTGGCTGTAAAGGTGTTGAATCTTCAAACGCGTGGGGCATCAAAGAGTTTCGTGGCCGAATGCAAAGCTTTAGGAAAAATCAAGCACAGAAACCTTCTCAGCATACTGACTTGTTGTTCAAGCGTTGATTACAAAGGGAATGGTTTCAAGGCCATAGTGTTCGAGTTCATGTCTAACTGGAGTCTTGAAACCTTGTTGCACAACAATACTGAAGATAGAGAGTCCACAAATCTGAGTCTCAACCTTGTACAAAGGGTAAACATTGCTCTTGATGTGGCTTTCGCATTGGATTATCTTCACAATGATTCATGGGAAGCTGTAGTTCATTGTGATATTAAGCCAAGCAATATTCTACTTGATGATGAAATGGTTGCCCACTTGGGAGACTTTGGATTAGCTAGACTAATTAATGATGCCACAAGCCATTCTAGCAATAATCAAGCAAGCTCCTCTGCAATTAAGGGAACTATTGGATATATTCCACCAGAGTATGGAGCAGGGGGCTCAGTGTCAATAGAGGGAGACATGTATAGCTATGGAATTCTTCTTCTAGAGATGGTCACTGGAAAGAAGCCAACTGATAGTATGTTTGGTGAAGGTCTAAGCCTACACATGTTCTGTAACATGGCAATTCCAGAAAGAATCAGTGAGATTGTTGATTCAAGATTGCTCATTCCATGGCCAATTGATGAACAAGAAAGAAGGGGAGTCAAAAGACAGCAAAACATGGAAGAGAACTTGAGTGAGGAGTGTGTAGCATCCTTTGCCAGGATTGGAGTTGCATCTCTCAAGAGATTCCTAATGAGCGGATGA 2787 0.4069 MIASQTTTSAVHVPLSSETDRLALLALKDKFANGDGGALPSWNHSLHFCEWQGVTCTRRHKRVFTLQLQNLDLGGTLAPALGNLTFLAELNLTDLNLYGQIPGEIGRLKRLQVLVLAQNNLHGEIPREIGRLKRLQALDLRKNNLKGEIPMELANCSNLREIDFWGNNFTGKVPSWFGYMIQLTMLELGENGLVGNIPPTLGNLSSIVTLSLAENHLQGDITHDLGSFRGPIPPTWGRSKDLHFFGINNNSLIGSGTARDLDFLSSLINCTNLAMLILQGNNLGGVLPDLIGNLSINLYALDMSNNKISGRLPQGIGNLFGLGYLFLNENFLEGTIPDSIGKLQNLGRLSLDENNLSGKIPIAIGNLTMLSEVYMSSNKLEGSIPFTLGYCTNMQTFSCGENNLTGSIPNQTFGYLEGLVNLDLADNSIHGPIPPDFGNLKHLSKLYLYANKLSGVIPVELSDCSALLELYLDINFFNGSIPKFLASLKSLEILELSNNSFSGTIPHELENLTLLNTLNLSYNQLYGPVPLGGVFSNITIMSLVGNKDLCGGIPQLNFPPCPTLSSNKHKGSLKKKIMLISVIGALLIPFLIFTSIYCLRKKPKKLPSSPSLDLEHGYLRVSYGELHQATNGFSSSNLVGTGNFGTVYRGNLVHFERPVAVKVLNLQTRGASKSFVAECKALGKIKHRNLLSILTCCSSVDYKGNGFKAIVFEFMSNWSLETLLHNNTEDRESTNLSLNLVQRVNIALDVAFALDYLHNDSWEAVVHCDIKPSNILLDDEMVAHLGDFGLARLINDATSHSSNNQASSSAIKGTIGYIPPEYGAGGSVSIEGDMYSYGILLLEMVTGKKPTDSMFGEGLSLHMFCNMAIPERISEIVDSRLLIPWPIDEQERRGVKRQQNMEENLSEECVASFARIGVASLKRFLMSG 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121373g00007 928 ProSitePatterns Serine/Threonine protein kinases active-site signature. 765 777 IPR008271 GO:0004672|GO:0006468
Stsc121373g00007 928 Gene3D Phosphorylase Kinase; domain 1 613 714 - -
Stsc121373g00007 928 FunFam LRR receptor-like serine/threonine-protein kinase EFR 604 714 - -
Stsc121373g00007 928 Pfam Protein kinase domain 635 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121373g00007 928 SUPERFAMILY Protein kinase-like (PK-like) 612 892 IPR011009 -
Stsc121373g00007 928 FunFam Piriformospora indica-insensitive protein 2 128 223 - -
Stsc121373g00007 928 Pfam Leucine rich repeat N-terminal domain 18 56 IPR013210 -
Stsc121373g00007 928 ProSitePatterns Protein kinases ATP-binding region signature. 639 662 IPR017441 GO:0005524
Stsc121373g00007 928 Gene3D Transferase(Phosphotransferase) domain 1 715 923 - -
Stsc121373g00007 928 Gene3D Ribonuclease Inhibitor 16 165 IPR032675 -
Stsc121373g00007 928 FunFam Leucine-rich repeat receptor-like kinase 22 127 - -
Stsc121373g00007 928 SMART serkin_6 633 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121373g00007 928 Pfam Leucine Rich Repeat 490 512 IPR001611 GO:0005515
Stsc121373g00007 928 Gene3D Ribonuclease Inhibitor 166 228 IPR032675 -
Stsc121373g00007 928 Gene3D Ribonuclease Inhibitor 229 561 IPR032675 -
Stsc121373g00007 928 SUPERFAMILY L domain-like 297 551 - -
Stsc121373g00007 928 SUPERFAMILY L domain-like 17 294 - -
Stsc121373g00007 928 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 715 923 - -
Stsc121373g00007 928 FunFam LRR receptor-like serine/threonine-protein kinase EFR 259 568 - -
Stsc121373g00007 928 PANTHER OS04G0122200 PROTEIN 227 881 - -
Stsc121373g00007 928 ProSiteProfiles Protein kinase domain profile. 633 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121373g00007 928 SMART LRR_typ_2 180 204 IPR003591 -
Stsc121373g00007 928 SMART LRR_typ_2 343 367 IPR003591 -
Stsc121373g00007 928 SMART LRR_typ_2 440 464 IPR003591 -
Stsc121373g00007 928 SMART LRR_typ_2 512 537 IPR003591 -
Stsc121373g00007 928 SMART LRR_typ_2 488 511 IPR003591 -
Stsc121373g00007 928 SMART LRR_typ_2 416 439 IPR003591 -
Stsc121373g00007 928 SMART LRR_typ_2 108 132 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121373g00007 Stsc-Chr121373 29936 33551 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121373g00007 15 882 Receptor kinase-like Gene Family AT3G47570 43.330 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc121373g00007 Pkinase 4.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121373g00007 - - ahf:112766919 962.214