Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121373g00006 ATGTCTAATGGGAGTCTAGAAACCTTGTTGCACAACAATACTGAAGATAGGGAGTCCACAAATCTGAGTCTCGACCTTGTACAAAGGGTAAACATTGCTCTTGATGTGGCTTTCGCATTGGATTATCTTCACAATGATTCATGGGAAGGTGTAGTTCATTGTGATATTAAGCCAAGCAATATTCTACTTGATGATGACATGGTTGCACACTTGGGAGATTTTGGATTAGCTAGACTCATTCATGGTTCTGCCAGCCGTGCTAGCAGTGGTCAAGCTAGCTCCTCTGCAATTAAGGGAACCATCGGATATATTCCACCAGAGTATGGAGGAGGTGGGTCAGTGTCAACTGAAGGAGACATGTATAGCTATGGAATTCTTCTTTTGGAGATGCTCACTGCAAAGAGGCCAACTGATACCATGTTTGGTGAAGGTCTAAACCTTCGCAGTTTCTGTAACATGGCAATTGCAGAAGGAATCAATGAAATTGTTGATTCAAGATTGCTCATTCCAATTAATGAACAAGATCAGGGAAAAAGGGTCATCACAAGGCAGCAAAATATGGAAGACACCATTCCAGAGTGTCTTGTGTCCTTTGCTAACATTGGGATTGCATGTTCTGAAGAATCTCCCTCTCAAAGAATGGGCATAAAAGATGTGATAATGGAGTTACATGCAATTAAACACAAACTGCTTTCATAA 699 0.412 MSNGSLETLLHNNTEDRESTNLSLDLVQRVNIALDVAFALDYLHNDSWEGVVHCDIKPSNILLDDDMVAHLGDFGLARLIHGSASRASSGQASSSAIKGTIGYIPPEYGGGGSVSTEGDMYSYGILLLEMLTAKRPTDTMFGEGLNLRSFCNMAIAEGINEIVDSRLLIPINEQDQGKRVITRQQNMEDTIPECLVSFANIGIACSEESPSQRMGIKDVIMELHAIKHKLLS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121373g00006 232 ProSiteProfiles Protein kinase domain profile. 1 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121373g00006 232 Gene3D Transferase(Phosphotransferase) domain 1 1 231 - -
Stsc121373g00006 232 Pfam Protein kinase domain 3 152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121373g00006 232 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 227 - -
Stsc121373g00006 232 ProSitePatterns Serine/Threonine protein kinases active-site signature. 51 63 IPR008271 GO:0004672|GO:0006468
Stsc121373g00006 232 SMART serkin_6 1 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121373g00006 232 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1 232 - -
Stsc121373g00006 232 SUPERFAMILY Protein kinase-like (PK-like) 1 220 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121373g00006 Stsc-Chr121373 26188 27176 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121373g00006 1 231 Receptor kinase-like Gene Family AT3G47570 44.397 7.91e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc121373g00006 Pkinase 9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121373g00006 - - ahf:112766492 332.028