Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121373g00004 ATGAGAGTCTCAGCCTTACAACTTCAAAATCAATACTGGGGTGGTACTCTTTCCCCATCCTTGGGAAATCTAACATTCCTCAAGGAGATCAATCTTACCAGCATCAACTTGCATGGTGAGATTCCAAGAGAAGTTGGCCATTTAAAGAGGTTGCAGATTCTTGACTTGAGGAAAAATAATCTTCATGGGCAGCTTCCTATCGAGATTATAAATTGTTCAAGCCTTCAAGTAATTAGATTGAGCCAAAATAATCTAACTGGCAAAGTTCCTTCGTGGTTTGGTTCCATGATAAAACTCTTTCAATTGGCGCTTTCAAGCAACAGTTTTGTTGGTGGTATCCCGCCTTCTTTGGGAAATCTTTCATCGCTTGAGAAGTTGACACTTGCATACAATCATTTGGAAGGAACCATACCTCCAGCTTTGGGTAGGTTGTCAAATTTGATACTTTTGTCTTTGGGTGGAAATAATCTTTCTGGCCAAGTTCCTCCTTCTTTTTACAACCTTTCAAATATTCAAATTCTTTCCATCGCTGTAAACCAGTTAGTGGGTAATCTTCTGTTGAATATACCAATGGCTTTTCCTAATCTTCAGAAGTTTGCATGTGGAATGAACCAATTCACTAGTACTTTCCCATCTGCAATCACCAACCTTTCCGAATTACAAGTGTTTGATATAGAAAAAAATGATTTTCATGGACCAATTCCTCCTACACTAGGAAGTTTACACAAACTTCATCATTTTGATATCGGTAATAACAGATTCGGAAGTGGAAGGGCTGACGATTTGGATTTCTTTTCCTCGTTAAAGAATTGTACTCAATTGCAAGTACTTGGCATTCATCAAAATTATTTCGGAGGTGTATTGACAGAAGATCTCATAGCCAACTTATCGAGCAATCTCGTTTGGCTTACTATGGGGTCCAATCAAATATCTGGAAGGATACCTGATGGAATTGGAAAACTAATCAACCTTGCAGCACTTGGTATGGAGGGAAATTCCCTTGAGGGAACAATTCCATATTCAATTGGAAAGCTCAAGAATCTGGTAGAGTTGAACTTGCAGTTAAATTACTTGTTTGGCAACATCCCTCTTGTCATTGGTAACCTTACTATGTTGTCTCTTGTTGATCTGGGGTCAAATAAATTTGAAGGAGTCATTCCTTTTACACTTGCAAATTGCACCAAGATGCAGAGATTTTATGCTGATAGTAACAACTTAAGTGGTAATATACCAAATCAATTATTTGGCTACCAACAAGGTTTAATAGAGTTGACCCTATACTCCAACTCCTTTACTGGTCCCATTCCTTTTGATCTTGGTAACTTGAACCATCTTTCCATCTTGCATTTACAAGATAACAAGTTAATTGGTGAGATTCCCATGGAACTTAGTGCTTGTTCTGCTCTAACAGAGCTCATACTAGAAAGAAACTTGTTCAATGGAAGTATACCTTCATTCTTGGGATCTCTACTATCCCTTGAAATCTTAGACATTTCTAATAACAACTTCTCAAATACAATTCCGCATGAACTCGTAAATTTCACGTTGCTGAGTACTTTGAATTTATCTTTCAACAATCTCTCTGGTGAAGTCCCGATAGGAGGTGTATTTAAAAACATCACAGCAATATCACTCACTGGAAATAAACATCTTTGTGGTGGGATTCCTCAATTGAATTTTCCTCCATGTCCTGTGTTGCCTTTACATAAGAAACACAAAAGATCGATTAAGAAGAGAGTCATCCTCAGCATTGCATTTGGAGGGGTTCTAATCACTTTTGTGACTTTAATGAGTATATATCTTCTCAAGAAAAAGGCAAACATGTCATCCACTACTTCTCTAGCTTTACAATATGGCTATGTGAAGGTTTCCTATGGAGAGCTACATCAAGCAACAAATGGATTTTCTTCATCCAATTTACTTGGCACAGGAAGCTTTGGTACTGTTTATAGAGGAATCCTTGTCCACTTTGAGAGACCTGTAGCTGTGAAGGTGCTGAATCTTCAAACACGTGGGGCATCAAAGAGTTTCGTGGCCGAATGCAAAGCTCTTGGAAAAATCAAGCACAGAAACCTTCTCAGCATACTCACTTGTTGTTCAAGCGTTGATTACAAAGGGAATGATTTCAAGGCCATAGTGTTTGATTTCATGTCTAATGGGAGTCTAGAAACCTTGTTGCACAACAACGCCGAAGATAATGAGGCCACAAATCTGAGTCTCAACCTTATACAAAGGGTAAATATTGCTCTTGATGTGGCTTTCGCATTGGATTATCTTCACAATGATTCATTGGAAGGTGTAGTTCATTGTGATATTAAGCCAAGCAATGTTCTACTTGATGACAACATGGTTGCCCACTTGGGAGACTTTGGATTAGCTAGACTCATTCATGATGCCGCAAGCCATTCTAGCAGTAATCAAGCAAGATCCTCTGCAATTAAGGGAACCATTGGATATATTCCACCAGAATATGGAGCAGGCGCCTCAGTGTCAATAGAGGAAGATATGTATAGCTATGGAATTCTTCTTCTGGAGATGATCACTGGAAAGAAGCCAACTGATAGTATGTTTGGTGAAGATCTAAGCCTACACATGTTCTGTAACATGGCAATTCCAGAAAGAATCAATGAGATTGTTGATTCAAGATTGCTCATTCCAAGGCCAGTTGATGCACAAGAAAGAGGAAGGGTTAGAAGACAGCAAAACATGGAAGAGAAGTTGAGTGAGGAGTGTGTAGCATCCTTTGCTAGGATTGGAGTTGCATGTTCTCAAAAAATTCCTAATGAGAGGATGAGCATAAAAGATGTCATATCTGAATTGCATGCAATCAAACAGAAGCTATCCTGCTAA 2850 0.3874 MRVSALQLQNQYWGGTLSPSLGNLTFLKEINLTSINLHGEIPREVGHLKRLQILDLRKNNLHGQLPIEIINCSSLQVIRLSQNNLTGKVPSWFGSMIKLFQLALSSNSFVGGIPPSLGNLSSLEKLTLAYNHLEGTIPPALGRLSNLILLSLGGNNLSGQVPPSFYNLSNIQILSIAVNQLVGNLLLNIPMAFPNLQKFACGMNQFTSTFPSAITNLSELQVFDIEKNDFHGPIPPTLGSLHKLHHFDIGNNRFGSGRADDLDFFSSLKNCTQLQVLGIHQNYFGGVLTEDLIANLSSNLVWLTMGSNQISGRIPDGIGKLINLAALGMEGNSLEGTIPYSIGKLKNLVELNLQLNYLFGNIPLVIGNLTMLSLVDLGSNKFEGVIPFTLANCTKMQRFYADSNNLSGNIPNQLFGYQQGLIELTLYSNSFTGPIPFDLGNLNHLSILHLQDNKLIGEIPMELSACSALTELILERNLFNGSIPSFLGSLLSLEILDISNNNFSNTIPHELVNFTLLSTLNLSFNNLSGEVPIGGVFKNITAISLTGNKHLCGGIPQLNFPPCPVLPLHKKHKRSIKKRVILSIAFGGVLITFVTLMSIYLLKKKANMSSTTSLALQYGYVKVSYGELHQATNGFSSSNLLGTGSFGTVYRGILVHFERPVAVKVLNLQTRGASKSFVAECKALGKIKHRNLLSILTCCSSVDYKGNDFKAIVFDFMSNGSLETLLHNNAEDNEATNLSLNLIQRVNIALDVAFALDYLHNDSLEGVVHCDIKPSNVLLDDNMVAHLGDFGLARLIHDAASHSSSNQARSSAIKGTIGYIPPEYGAGASVSIEEDMYSYGILLLEMITGKKPTDSMFGEDLSLHMFCNMAIPERINEIVDSRLLIPRPVDAQERGRVRRQQNMEEKLSEECVASFARIGVACSQKIPNERMSIKDVISELHAIKQKLSC 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121373g00004 949 PANTHER RECEPTOR-LIKE PROTEIN 55 367 946 - -
Stsc121373g00004 949 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515
Stsc121373g00004 949 Pfam Leucine rich repeat 50 108 IPR001611 GO:0005515
Stsc121373g00004 949 SUPERFAMILY L domain-like 297 553 - -
Stsc121373g00004 949 Gene3D Ribonuclease Inhibitor 126 260 IPR032675 -
Stsc121373g00004 949 ProSiteProfiles Protein kinase domain profile. 635 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121373g00004 949 FunFam LRR receptor-like serine/threonine-protein kinase EFR 605 716 - -
Stsc121373g00004 949 SUPERFAMILY Protein kinase-like (PK-like) 609 939 IPR011009 -
Stsc121373g00004 949 FunFam Piriformospora indica-insensitive protein 2 90 187 - -
Stsc121373g00004 949 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 717 949 - -
Stsc121373g00004 949 ProSitePatterns Serine/Threonine protein kinases active-site signature. 767 779 IPR008271 GO:0004672|GO:0006468
Stsc121373g00004 949 Pfam Protein kinase domain 637 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121373g00004 949 FunFam Inactive leucine-rich repeat receptor-like protein kinase 269 563 - -
Stsc121373g00004 949 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 89 - -
Stsc121373g00004 949 FunFam Lrr receptor-like serinethreonine-protein kinase gso2 191 268 - -
Stsc121373g00004 949 SMART LRR_typ_2 369 392 IPR003591 -
Stsc121373g00004 949 SMART LRR_typ_2 490 514 IPR003591 -
Stsc121373g00004 949 SMART LRR_typ_2 442 466 IPR003591 -
Stsc121373g00004 949 SMART LRR_typ_2 48 72 IPR003591 -
Stsc121373g00004 949 SMART LRR_typ_2 120 144 IPR003591 -
Stsc121373g00004 949 ProSitePatterns Protein kinases ATP-binding region signature. 641 664 IPR017441 GO:0005524
Stsc121373g00004 949 SUPERFAMILY L domain-like 3 254 - -
Stsc121373g00004 949 Gene3D Phosphorylase Kinase; domain 1 596 716 - -
Stsc121373g00004 949 Gene3D Transferase(Phosphotransferase) domain 1 717 948 - -
Stsc121373g00004 949 Gene3D Ribonuclease Inhibitor 261 563 IPR032675 -
Stsc121373g00004 949 Gene3D Ribonuclease Inhibitor 2 125 IPR032675 -
Stsc121373g00004 949 SMART serkin_6 635 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121373g00004 Stsc-Chr121373 14592 17768 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121373g00004 2 947 Receptor kinase-like Gene Family AT3G47570 44.050 0.0 755
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc121373g00004 Pkinase 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121373g00004 - - ahf:112766919 1385.93