Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121373g00001 ATGGCCATGCCCTTGAGTTCAGATACCGATAAGATTGCTTTACTTGCTTTGAAGGACAAGCTTACCAATGGTGACCCTCATGCTCTACCATCGTGGAATCATTCTCTCCATTTCTGTCAATGGGAGGGCGTTACATGCAGTCACCGTCGAATGAGAGTCTCAGCCTTGCAACTTCAAAATCAATACTTGGGTGGTACGCTTGCGTCAGCTTTGGGAAATCTAACGTTCCTAAGGGTGATCAATTTTACTAACATTTACTTGCGTGGTGAGATTCCAAGAGAAGTTGGTCATTTAAAGAGGCTGCAGATTCTTGACTTGAGGCAGAATAATTTTCGTGGTCAGATTCCTATGGAAATGATAAATTGTTCAAGACTTGAGCTTGGAGTCAACGGTTTTGTTGGCAGCATCCTAGCTTCTTTGGGAAATCTTTCATCGCTTGAGACGTTGTCACTTGCATACAATCATTTGGAAGGACCCATAACTCCATCTTTGGGTAGGTTGTCAAATTTGAAAGTTTTGCTTTTGGGGGTAAATAATTTGTCTGGCCAAGTCCCCCCTCTGCTATATAACCTCTCAAATCTTCGATTTCTTTCACTCGTGAAAAATCAGTTGGTGGGTACTATTCTCTCGAATATACCAACGGGTTTTCCCTATCTTGAGAATTTTGAGGGTGCATTGAACAGATTCACTGGTACTTTGCCATCTTCAATGTTCAACCTTTCGGAACTACAAAAATTTGATATAATAGGAAATGGTTTTCATGGACCAATTTCTCCTGCTATAGGAAGTTTACACAAACTCCAGTCATTTAAGGTCGGACATAACAGATTAGGAAGTGGAAGGGCTGACGATTTGGATTTCCTTTCCTCCTTACAGAATTGTACTCAATTGCAAATCCTTGATCTTGATAGAAATTATTTAGGCGGTATATTGACAGATCTCATAGGCAACTTATCAAGCAATCTCGTTATGCTTTATATGGGGTCCAATCAAATATCCGGAAGGATACCTAAAGGAATTGGAAAACTAATTAACTTAGAATTACTTGGTATGGAGGATAATTTCCTTGAGGGAACAATGCCATCTTCAATTGGAAAACTAAAGAATCTGGTACGATTGGTGTTGGGGAGAAATAAGTTGTTTGGCAACATTCCTCTTATTATTGGTAACCTTACTATGTTGTCTTTAGTTGGTCTAGAGTCAAATAAATTTGAAGGATCCATTCCTTTTACACTTGCAAATTGCACCAAGATGGAGAGATTTTATGTTAATAATAATAGCTTAAGTGGTAATATACCCATTCAAACATTTGGCTACCAACAAGGTTTGATAGAGCTTTACCTATTTTCCAACTCCTTTACAGGCACCATTCCTTCTGATCTTGGCAACTTGAACCATCTTTCCATCTTGCATTTACAAGATAACAAGTTGATTGGTGAGATTCCCATGGAACTTAGTGCTTGTTCTGCTCTAACAGAGCTCAAACTAGAAAGAAACTCGTTCAACGGAAGTATACCTTCATTCTTGGGATCTCTACTATCCCTTGAAATCTTAGACCTTTCTAGTAACAACTTCTCAAGCACAATTCCGCATGAACTTGTGAATCTCACTCTGTTGAGTTCTTTGAACTTATCTTTCAACCATCTCTCTGGTGAAGTCCCGGTAGGAGGAGTATTTAAAAACATGACAGCAATATCACTCACTGGAAACAAACATCTTTGTGGTGGGATACCTCAATTGAATCTTCCTCCATGTCTTGTGTTGCCTTTACATAAGAAACACAAGAGATCTATTAACAAGAGAGTCATCCTCACCATAGCATTCGGAGGGATTCTAATCACTTTTGTAACTTTTATCAGTATATATCTTCTCAAGGAAAAGGCAAAAAGGTTATCCATTAAATCCCTAAGTTTGCAATATGGCTATGTGAAGGTTTCCTATGGAGAGCTACATCAAGCAACAAATGGATTTTCTTCATCCAATTTAGTTGGCGCAGGAAACTTTGGTACTGTGTATAGAGGAAACCTTGTCCACTTTGAGAGACCTGTAGCTGTGAAGGTGCTGAATCTTCAAACACGTGGGGCATCAAGAAGTTTCGTGGCTGAAAGCAAAGCTCTAGGAAAAATCAAGCACAGAAACCTTCTCGGCATACTTACTTCTTGTTCAAGCGTTGATTACAAAGGAAATGATTTCAAGGCCATAGTGTTTGAGTTCATGTCTAATGGGAGTCTAGAAAACTTGTTGCACAACAACGCCGAAGATAATGAGGCCACAAATCTGAGTCTCAACCTTGTACAAAGGGTAAATATTGCTCTTGATGTAGCTTTCGCATTGGATTATCTTCACAATGATTCATGGGAAGGTGTAGTTCATTGTGATATAAAGCCAAGCAATGTTCTACTTGATGATGACATGGTTGCCCACTTGGGAGACTTTGGATTAGCTAGACTAATTAATGATGCCACAAGCCATTCTAGCAATAATCAAGCAAGCTCCTCTGCAATTAAGGGAACTATTGGATATATTCCACCAGGCGGCTCAGTGTCAATAGAGGGAGACATGTATAGCTATGGAATTCTTCTTCTGGAGATGATCACTGGAAAGAAGCCAACTGATAGTATGTTTGGTGAATATCTAAGCCTACACATGTTCTGTAACATGGCAATTCCAGAAAGAATAAGTGAGATTGTTGATTCAAGATTGCTCATTCCATGGCCAATTGATGAACAAGAAAGAAGAAGGATCACAAGACGGCAAAATATGGAAGAGAACTTGAGTGAGGAGTGTGTAGAATCCTTTGCTAGGATTGGAGTTGCATGTTCACGAGAGATTCCTACTCAGCGAATGAGCATAAAAGATGTCATAACTGAATTGCATGCAATCAAACAGAAGCTATCCTGCGAATGA 2907 0.3939 MAMPLSSDTDKIALLALKDKLTNGDPHALPSWNHSLHFCQWEGVTCSHRRMRVSALQLQNQYLGGTLASALGNLTFLRVINFTNIYLRGEIPREVGHLKRLQILDLRQNNFRGQIPMEMINCSRLELGVNGFVGSILASLGNLSSLETLSLAYNHLEGPITPSLGRLSNLKVLLLGVNNLSGQVPPLLYNLSNLRFLSLVKNQLVGTILSNIPTGFPYLENFEGALNRFTGTLPSSMFNLSELQKFDIIGNGFHGPISPAIGSLHKLQSFKVGHNRLGSGRADDLDFLSSLQNCTQLQILDLDRNYLGGILTDLIGNLSSNLVMLYMGSNQISGRIPKGIGKLINLELLGMEDNFLEGTMPSSIGKLKNLVRLVLGRNKLFGNIPLIIGNLTMLSLVGLESNKFEGSIPFTLANCTKMERFYVNNNSLSGNIPIQTFGYQQGLIELYLFSNSFTGTIPSDLGNLNHLSILHLQDNKLIGEIPMELSACSALTELKLERNSFNGSIPSFLGSLLSLEILDLSSNNFSSTIPHELVNLTLLSSLNLSFNHLSGEVPVGGVFKNMTAISLTGNKHLCGGIPQLNLPPCLVLPLHKKHKRSINKRVILTIAFGGILITFVTFISIYLLKEKAKRLSIKSLSLQYGYVKVSYGELHQATNGFSSSNLVGAGNFGTVYRGNLVHFERPVAVKVLNLQTRGASRSFVAESKALGKIKHRNLLGILTSCSSVDYKGNDFKAIVFEFMSNGSLENLLHNNAEDNEATNLSLNLVQRVNIALDVAFALDYLHNDSWEGVVHCDIKPSNVLLDDDMVAHLGDFGLARLINDATSHSSNNQASSSAIKGTIGYIPPGGSVSIEGDMYSYGILLLEMITGKKPTDSMFGEYLSLHMFCNMAIPERISEIVDSRLLIPWPIDEQERRRITRRQNMEENLSEECVESFARIGVACSREIPTQRMSIKDVITELHAIKQKLSCE 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121373g00001 968 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 739 968 - -
Stsc121373g00001 968 SUPERFAMILY L domain-like 8 307 - -
Stsc121373g00001 968 ProSitePatterns Protein kinases ATP-binding region signature. 663 686 IPR017441 GO:0005524
Stsc121373g00001 968 Pfam Leucine rich repeat 490 549 IPR001611 GO:0005515
Stsc121373g00001 968 SMART LRR_sd22_2 264 287 - -
Stsc121373g00001 968 SMART LRR_sd22_2 143 172 - -
Stsc121373g00001 968 SMART LRR_sd22_2 191 214 - -
Stsc121373g00001 968 SMART LRR_sd22_2 319 348 - -
Stsc121373g00001 968 SMART LRR_sd22_2 367 386 - -
Stsc121373g00001 968 Pfam Leucine rich repeat N-terminal domain 8 47 IPR013210 -
Stsc121373g00001 968 Gene3D Ribonuclease Inhibitor 6 125 IPR032675 -
Stsc121373g00001 968 Pfam Protein kinase domain 659 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121373g00001 968 SMART serkin_6 657 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121373g00001 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672|GO:0006468
Stsc121373g00001 968 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 47 292 - -
Stsc121373g00001 968 FunFam LRR receptor-like serine/threonine-protein kinase EFR 628 738 - -
Stsc121373g00001 968 SUPERFAMILY Protein kinase-like (PK-like) 638 961 IPR011009 -
Stsc121373g00001 968 PANTHER RECEPTOR-LIKE PROTEIN 55 346 963 - -
Stsc121373g00001 968 Gene3D Phosphorylase Kinase; domain 1 619 738 - -
Stsc121373g00001 968 FunFam Inactive leucine-rich repeat receptor-like protein kinase 293 585 - -
Stsc121373g00001 968 Gene3D Ribonuclease Inhibitor 126 281 IPR032675 -
Stsc121373g00001 968 Gene3D Ribonuclease Inhibitor 282 585 IPR032675 -
Stsc121373g00001 968 SMART LRR_typ_2 143 167 IPR003591 -
Stsc121373g00001 968 SMART LRR_typ_2 191 215 IPR003591 -
Stsc121373g00001 968 SMART LRR_typ_2 512 535 IPR003591 -
Stsc121373g00001 968 SMART LRR_typ_2 464 488 IPR003591 -
Stsc121373g00001 968 SMART LRR_typ_2 98 122 IPR003591 -
Stsc121373g00001 968 SMART LRR_typ_2 536 561 IPR003591 -
Stsc121373g00001 968 SUPERFAMILY L domain-like 320 575 - -
Stsc121373g00001 968 Gene3D Transferase(Phosphotransferase) domain 1 739 967 - -
Stsc121373g00001 968 ProSiteProfiles Protein kinase domain profile. 657 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121373g00001 Stsc-Chr121373 529 4025 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121373g00001 5 965 Receptor kinase-like Gene Family AT3G47570 41.633 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc121373g00001 Pkinase 1.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121373g00001 - - ahf:112766919 1326.61