Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121372g00006 ATGAACATGTTAGGCCTGAGAGACCTAGTTTTCATAGCACCAACCCATTCACTTCACCATCACCACCACCACCAGCAAGGCCAAACCATAATCTCACAAGACCAACACAACAGCCATGGCGGCCATACCAACAATAACAACAACACCGACAATAATAGCATTCCTTTGCCTCCATCATCACTCAGCGTTGGCCTTGGAATCTTCCCTCTCTTAACCGCCACACCCTGCATGCCACCACAAGATAACAACAATGTTCATCACCATGACCAACAAGAACACGTTCTTGTCAACACCACCGCCAATAATAGTAGTTACTGGAACCTCAAGATGTGTCCTGAAGTTTCAGAACACGACGGCAGCGGCGATGAAAACAACAATGGAGGCGGTGGTGGTGGTCTGTATGGTCCTGAATTCAGGGTGTGCCAGGATTGTGGAAACAGGGCAAAGAAAGATTGCAGTTACAAGAGGTGCAGGACTTGTTGCAAGGGGCGTGGATATGATTGCAGCACTCACGTGAAGAGCACGTGGGTCCCCGTGTCGCATCGCCGGGCCCGCGATATCGCCGTTGTTGCTGCTGCTGCCGGCGGTGACGGTGGTGGTGATGGTGGGAGTAATAATAAGAGGCTTAGAGGTTTTGGTTCATCACAAACAACTACAACTACTACTAATACCTCTCATAGTTCAACCTCTAATGCTACCACAACTAAGAGTTTGGATTCTACCTCTTGTCACCAAGATGCTGAATTCAAACAATCTTTACCGGGGCAAGTTCGCGCGCCGGCGGCGTTTAAGTGCCACAGAGTGTCTGCTATTGGGAATGGGGAAGATGAAATCACATACTTGGCCACTGTCCAGATCTGTGGGCATGTGTTCAAAGGGTTTCTTTATGATCAAGGTGGCGATGGCAAGAATGAAGTTCCATGTGTTTCAGTGCTGCAACTTGGAAACAGTGGAAGTGGGAAGAACAACAACAACAACAATGGGGAATGCTCCTCCCCAACTCCAATTGGGGTTCCAATCACTGCCTACCCTGCTTCTGCTTGCTGA 1047 0.49 MNMLGLRDLVFIAPTHSLHHHHHHQQGQTIISQDQHNSHGGHTNNNNNTDNNSIPLPPSSLSVGLGIFPLLTATPCMPPQDNNNVHHHDQQEHVLVNTTANNSSYWNLKMCPEVSEHDGSGDENNNGGGGGGLYGPEFRVCQDCGNRAKKDCSYKRCRTCCKGRGYDCSTHVKSTWVPVSHRRARDIAVVAAAAGGDGGGDGGSNNKRLRGFGSSQTTTTTTNTSHSSTSNATTTKSLDSTSCHQDAEFKQSLPGQVRAPAAFKCHRVSAIGNGEDEITYLATVQICGHVFKGFLYDQGGDGKNEVPCVSVLQLGNSGSGKNNNNNNGECSSPTPIGVPITAYPASAC 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121372g00006 348 MobiDBLite consensus disorder prediction 17 58 - -
Stsc121372g00006 348 NCBIfam putative zinc finger domain, LRP1 type 140 182 IPR006510 -
Stsc121372g00006 348 MobiDBLite consensus disorder prediction 208 238 - -
Stsc121372g00006 348 Pfam Domain of unknown function (DUF702) 140 301 - -
Stsc121372g00006 348 MobiDBLite consensus disorder prediction 194 238 - -
Stsc121372g00006 348 MobiDBLite consensus disorder prediction 28 58 - -
Stsc121372g00006 348 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 22 328 IPR007818 GO:0003700|GO:0006355
Stsc121372g00006 348 NCBIfam LRP1 C-terminal domain 253 299 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121372g00006 Stsc-Chr121372 12193 19658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121372g00006 1 343 C2H2 Transcription Factor Family AT5G12330 36.628 1.80e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Stsc121372g00006 DUF702 3e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121372g00006 - - adu:107462849 476.092