Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121370g00005 GAAAATCACCCAAGTGCATTGGATAACTTTGAGGAAATATTGAGCATTGCTAAAGGGAAAGAGATTGTTTTGTTTTTGGATTATGATGGAACACTATCACCAATTGTGGATGATCCTGATCAAGCTCATATAAGTAATGCTATGCGCATCGCCTTATGTGAAATTGCTTCTTGTTTTCAAACCGCCATTATAAGTGGAAGACGGAGGAATAAGGTATATGAATTTGTAAAGTTAAGGAATCTGTATTATGCTGGAAGTCATGGCATGGATATATCCACTCCATTGGGCTCTTCAAATAATGAAAATCAGAAGCATCAAACAAAGGCTATTGATGAAAATGGTAATCAATTTGTTAACTTCCTTCCCGCAAAAGAATATTTGTCAACAATCCAAGAGATAATTGAGGTTCTAAGGGAAACTATTGCAACAATAAAGGGCCCTACCATTGAAGATAATTTGTACTGCATTAGTGTACACTACCGACGTGTCAAGAGTGAAGAGGATGTTGGTGTCCTCAAAGAGATTGTGGAGTCCATTATCAAAGCTTACCCAGATTTTCAAATCTCGGGAGGAAGAAAGGTTATGGAGATACGACCAAAGATAAATTGGGATAAAGGTCGGGCACTACTGTATTTATTAGAGACTCTTGGCTTTGACAACTTTAATGATGTTCTACCAATTTACATAGGGGATGACAAAACAGATGAAGATGCTTTTAAGGTTATAGATCACATAGGGCATGGTTTTCCAATAATAGTTTCTTCAGTTGCTAAAGACACCATGGCTTCATTTTCTCTGCGTGACCCTTCTCATGTTATGGCTTTCTTGATACGTTTAGCAAAATGGAAAAGGAATTAA 858 0.3706 ENHPSALDNFEEILSIAKGKEIVLFLDYDGTLSPIVDDPDQAHISNAMRIALCEIASCFQTAIISGRRRNKVYEFVKLRNLYYAGSHGMDISTPLGSSNNENQKHQTKAIDENGNQFVNFLPAKEYLSTIQEIIEVLRETIATIKGPTIEDNLYCISVHYRRVKSEEDVGVLKEIVESIIKAYPDFQISGGRKVMEIRPKINWDKGRALLYLLETLGFDNFNDVLPIYIGDDKTDEDAFKVIDHIGHGFPIIVSSVAKDTMASFSLRDPSHVMAFLIRLAKWKRN 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121370g00005 285 FunFam Trehalose 6-phosphate phosphatase 129 285 - -
Stsc121370g00005 285 Gene3D - 103 200 - -
Stsc121370g00005 285 FunFam Trehalose 6-phosphate phosphatase 123 200 - -
Stsc121370g00005 285 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 2 284 IPR044651 GO:0004805|GO:0005992
Stsc121370g00005 285 Gene3D - 24 266 IPR023214 -
Stsc121370g00005 285 Pfam Trehalose-phosphatase 25 270 IPR003337 GO:0003824|GO:0005992
Stsc121370g00005 285 NCBIfam HAD-IIB family hydrolase 24 246 IPR006379 -
Stsc121370g00005 285 NCBIfam trehalose-phosphatase 20 280 IPR003337 GO:0003824|GO:0005992
Stsc121370g00005 285 SUPERFAMILY HAD-like 23 283 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121370g00005 Stsc-Chr121370 25934 29263 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121370g00005 24 276 Trehalose Biosynthesis Gene Families AT1G60140 25.000 9.44e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121370g00005 K01087 - gmx:100799466 423.32