Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121370g00004 ATGCCAACAAGTAAGCTCTTCTTCTCCCAACTCCGTCTACTCCATCTCCCTTCTCCTTCTTCTCTCAGTATGAAGCCACCATCTTCATTACTCCTCTCTCGTCCTTCTAGAACCTTCCTTCCCACCTTCCCTTTCAAATTCAAGCACCTCGCTCTTCGAAACGCACCGTTTCGCGCCCTCTCCACTCGCTCCGACTCAACGCGCCGCAAACAAAGGCCTCGCCTTTCTTCGTCTTCTTCGTCTCCCTCCGCAAACCCTAAGAGCTTAATCGACGACGAAGCTGAGCTCAGTGACTGGGTCGACAAGATTAGAACCAAGCGAGTTGACTCGGAATTCGGTGAGTCAACCCGGAATCCCAGGCAAGTTCGCCGCGAGCCTTCTTCTTCGAACTCGTCGTTCTCGCGGAGTTCGGGGTTTTCGCAGCGAAGATTCGGTCGTGAATTGGAGGAGGATGACAATGGGGGATTCAGGACAAGGAAGAGAAGGGGTGTGGAATTGAACAGAGGAGGTGGAGGGAAGAGTTTGAGGAGAAAACCTAAGCCCCAATTGATGAGCGATGATGGTGATGAAGATGATGATGATGAAGTGGTTGTGAGAAAGGGATTCAAGGGTTTTCTGAGTGAGGAAGAAGAAGAAAGTGATGAGAGTGAAGAAGAAAGTGATGAGATTGTGAGAAAAAGTAGAAGTGCTTTGTTTGGTGGCACTAAACAACGAGAACCAGCACCAGCAGCACCAAGGGCTTCTTCACCTTCTGGAACTGATTCTTATTTGAGTGACACCAGGTTCGACCAATGTTCAGTCTCCCCACTATCATTGAAAGGAGTCAAAGATGCTGGATACGAGAAGATGACTATTGTACAGGCAGCAACTCTTCCAGTAATACTCAAAGGTAAGGATGTCCTTGCCAAGGCCAGAACAGGCACTGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGTTGTTGCAAATTCACCACCAACTGATCGTGATCATAAGCGGCCACCAATTCATGTGCTTGTCATATGTCCAACTCGAGAGCTTGCAAGTCAAGCGGCTGCAGAAGCTGGTAAATTGCTTAAGTATCATCCTACCATTGGTGTTCAGGTTGTAATTGGTGGGACGAGACTTGCCTTAGAGCAGAAGCGCATGCAAGCAAATCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGGGATCATGTGGAGAATACTGCTGGTTTCGCAACTCGGCTGATGGGTGTGAAAGTTTTGGTGCTCGATGAAGCTGATCATTTACTCGACATGGGATTTCGGAAAGACATTGAGAAGATAATTGCTGCTGTACCTAAGCAACGACAAACACTTATGTTTTCTGCCACAATTCCGGATGAGGTGCGTCAAGTCTGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAATACGGTTCAAGAGGGAAGTGAGGAGACACATTCACAGGTTCGCCAAACGCATTTAGTTGCTCCATTAGACAAGCATTTCTCTTTACTCTATGCTCTTCTAAAGGAGCACATTGCCGATGACCTTGACTATAAGGTTCTTGTATTCTGCACAACAGCCATGGTCACAAGACTTGTTGCCGAACTTCTTGGTGAGTTGAACCTGAATGTTAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACTAGAGTCTCCGAAGAATTTCGCAAGTCAAAGGGACTTATCCTAGTTACATCCGATGTATCTGCTCGTGGAGTTGATTATCCAGATGTCACTCTTGTTGTACAGGTTGGTTTACCAGCTGACAGAGAACAGTATATACATAGACTCGGTAGAACGGGACGTCGAGGGAAAGAAGGGCAGGGCATATTGCTTCTGGCTCCATGGGAAGAGTTCTTCTTATCTACCATAAAAGATTTGCCTATTGAGAAAGCTAACATACCTTCTGTTGATCCTGACACAAAGAAAAAGCAATTTCGTCAATATAAATGGAGTTCGATCAATGGTTGGATCGATGTCGAAGAAATATTCAATCTTTCAGGGTTTATTTTGCCAGTGAAGTGA 2052 0.4576 MPTSKLFFSQLRLLHLPSPSSLSMKPPSSLLLSRPSRTFLPTFPFKFKHLALRNAPFRALSTRSDSTRRKQRPRLSSSSSSPSANPKSLIDDEAELSDWVDKIRTKRVDSEFGESTRNPRQVRREPSSSNSSFSRSSGFSQRRFGRELEEDDNGGFRTRKRRGVELNRGGGGKSLRRKPKPQLMSDDGDEDDDDEVVVRKGFKGFLSEEEEESDESEEESDEIVRKSRSALFGGTKQREPAPAAPRASSPSGTDSYLSDTRFDQCSVSPLSLKGVKDAGYEKMTIVQAATLPVILKGKDVLAKARTGTGKTVAFLLPSIEVVANSPPTDRDHKRPPIHVLVICPTRELASQAAAEAGKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHVENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATIPDEVRQVCHIALRRDHEFINTVQEGSEETHSQVRQTHLVAPLDKHFSLLYALLKEHIADDLDYKVLVFCTTAMVTRLVAELLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLSTIKDLPIEKANIPSVDPDTKKKQFRQYKWSSINGWIDVEEIFNLSGFILPVK 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121370g00004 683 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 260 288 IPR014014 GO:0003724
Stsc121370g00004 683 MobiDBLite consensus disorder prediction 122 141 - -
Stsc121370g00004 683 Gene3D - 199 475 IPR027417 -
Stsc121370g00004 683 Coils Coil 206 226 - -
Stsc121370g00004 683 CDD SF2_C_DEAD 489 622 - -
Stsc121370g00004 683 MobiDBLite consensus disorder prediction 73 87 - -
Stsc121370g00004 683 Gene3D - 483 671 IPR027417 -
Stsc121370g00004 683 Pfam Helicase conserved C-terminal domain 505 613 IPR001650 -
Stsc121370g00004 683 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 508 654 IPR001650 -
Stsc121370g00004 683 MobiDBLite consensus disorder prediction 110 257 - -
Stsc121370g00004 683 Pfam DEAD/DEAH box helicase 286 462 IPR011545 GO:0003676|GO:0005524
Stsc121370g00004 683 MobiDBLite consensus disorder prediction 142 167 - -
Stsc121370g00004 683 SMART ultradead3 279 492 IPR014001 -
Stsc121370g00004 683 MobiDBLite consensus disorder prediction 61 91 - -
Stsc121370g00004 683 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 291 474 IPR014001 -
Stsc121370g00004 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 630 IPR027417 -
Stsc121370g00004 683 PANTHER RNA HELICASE 217 649 - -
Stsc121370g00004 683 SMART helicmild6 532 613 IPR001650 -
Stsc121370g00004 683 CDD DEADc_MSS116 267 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121370g00004 Stsc-Chr121370 16395 20412 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121370g00004 253 643 Eukaryotic Initiation Factors Gene Family AT3G19760 28.928 5.58e-47 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121370g00004 - - adu:107463398 1066.6