Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121366g00002 ATGAGCAAGGTTAACAAGCCTCCACTATCTTTGTCAAGACTGATTAAGTATACCAAGGGGAAGGAAGGGAAGATTGCTGTGGTGGTAGGGACTATAACTGATGATATTCGTGTATATGATGTTCCACCCTTGAAAGTTACAGCACTCAGGTTCACCGAGACTGCACGTGCAAGAATAGAGAAGGCCGGTGGTGAATGCTTGACATTTGATCAGTTGGCTCTTAGGGCCCCTCTCGGACAGAACACGGTCCTTCTTAGAGGCCCTAAGAATGCTCGGGAAGCCGTGAAGCACTTCGGTCCTGCACCTGGTGTGCCCCACAGCCACTCCAAGCCTTATGTGCGATCAAAGGGAAGGAAGTTTGAGAGGGCTAGAGGAAGGAGGAACAGCAAAGGGTTTAGGGTTTGA 405 0.4963 MSKVNKPPLSLSRLIKYTKGKEGKIAVVVGTITDDIRVYDVPPLKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGRRNSKGFRV 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121366g00002 134 PANTHER 60S RIBOSOMAL PROTEIN L18 1 134 IPR000039 GO:0003735|GO:0005840|GO:0006412
Stsc121366g00002 134 SUPERFAMILY Ribosomal proteins L15p and L18e 2 86 IPR036227 -
Stsc121366g00002 134 MobiDBLite consensus disorder prediction 111 134 - -
Stsc121366g00002 134 Pfam Ribosomal protein 60S L18 and 50S L18e 1 134 IPR021131 -
Stsc121366g00002 134 MobiDBLite consensus disorder prediction 98 134 - -
Stsc121366g00002 134 Gene3D - 1 134 - -
Stsc121366g00002 134 FunFam 60S ribosomal protein L18 1 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121366g00002 Stsc-Chr121366 11405 14346 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121366g00002 1 134 Cytoplasmic Ribosomal Protein Gene Family AT3G05590 83.582 9.21e-83 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121366g00002 K02883 - gmx:100791657 260.381