Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121363g00007 ATGAGAATAATCACTTCAAGAGACAGTTTAGAAGTAGGCCAATCTATCCAAGATGGTGAGACTTTGGTTTCTGCTGGTGGAAGCTTTGAATTGGGTTTCTTTAGTCCCGGGGTTCCGACAAATCGTTACTTAGGTGTGTGGTACAGAGATTCATCAGGGAATTCAACAGTTGTGTGGGTTGCAAACAAAGATATACCAATTCAAAGCAACAAAACAAGTGTTTTGAAACTCAGACAGAATGGGATTCTTCAGATTCTGAATGGCAGCACTAACAGCACCATTTGGTCTTCCAACACCTCGGGCGGTTCAATCGCGAAACTCTTGGATTCGGGGAATCTTGTAGTGAAAAGTGGACAAAGTACTGAGGAGGAAAACTTTTTGTGGCAAAGTTTTGATTATCCATGTGATACACTGATGCCAGGAATGAAGCTTGAATTGAACTTTGTTACTGGTTTTGAGAGATCTTTGTCATCTTGGAAAAGTGCAGAGGATCCTGCTGTAGGAGAATATTCTATAAAGTTTGATCCTAGAGGGTATCCACAAGTAATGCAATTCAAAGGATCTGTTAAATATTTCCGACTCGGAACATGGAATGGCCTTTATTTTGATGGACATCCAACCCAGGAAGATCAACAATATAGGCATCATTTTGTACTGGACAAAACCCAGGTGTATTATGAGTTTGAAATACTTGATAGATCCATTTTCCACCTCTATAAACTACAACCTTCAGGTAATTCTATAGGTACTACTTGGAAGAAATATCAAACAAGAACTGAGGTTGCAGTTGGCACCACAATTGATGGATACAATGTGTGTGGAAGTTATGCCTTTTGTGGTTCAAATGCTATATGCATGGTTGATGCTAGCCTTGCAACATGTGAATGCCTTAAAGGAAATGTTCCCAAGTTTCCCCAACAATGGAATATGTCGAATTGGTCTGATGGTTGTGTTAGGAAGAGTTCATTGGGTTGTAATGACACTGATAGCTTCTTAAGTTATACAGACATAAAAGTGCCAGACACTTCATCCTCATGGTATAACCAGACCATGAATCTTGAAGAATGTAAACAATTTTGCCTAAAGAACTGTTCTTGTGTTGCGTATGCAAATTTGGATATCCGTAATGGAGGAAGTGGCTGCCTTCTTTGGTTTGATCATCTTATTGACATGATACAATTCTCAAGAGCTGGTCAAGACATTTACATCAAAGTCCCTACTTCAGAATTAGGCAATGGCCATGGAAATTTGAATAAAAAGAAGGTGGGAATTTCAGTTGGAGTTGCAAGAATAATTCAAAGAAATAGGCAAAGACAGAAGGTCACTGACCTACCAACATTTGATTTCTCAGTCCTAGTTAAAGCAACAGATAACTTTTCAAGTAGTAACAAAATTGGAGAAGGTGGTTTTGGATCAGTATACATGGGCAGATTAACAAATGGGCAAGAGTTAGCTGTGAAAAGGCTTTCGAAAAAGTCTAAACAAGGTTTAGAAGAGTTTAAAAATGAAGTGGTGTTGATAGCCAAACTACAACATCGTAATCTTGTAAAGCTTCTTGGCTGTTGCATTCAAGGAGTAGAAAAAATATTGGTTTATGAATTTATGCCGAACAAAAGCTTAGACTACTTTGTTTTCGGTGAAGTCAGAAAAATGATGCTAGATTGGATTAAGCATTTCAACATCATCGATGGCATTGCTCGGGGGCTTCTTTATCTTTATCAAGATTCTAGATTGAGGATTATTCACAGGGATCTAAAAACCAGTAATATTCTATTGGATGCAAATTTGAATCCTAAAATATCAGACTTCGGCCTAGCTCGGACATTCTTAGGCGATCAACTCGAGGCTAACACAAACAGAGTAGTCGGAACCTAG 1875 0.3851 MRIITSRDSLEVGQSIQDGETLVSAGGSFELGFFSPGVPTNRYLGVWYRDSSGNSTVVWVANKDIPIQSNKTSVLKLRQNGILQILNGSTNSTIWSSNTSGGSIAKLLDSGNLVVKSGQSTEEENFLWQSFDYPCDTLMPGMKLELNFVTGFERSLSSWKSAEDPAVGEYSIKFDPRGYPQVMQFKGSVKYFRLGTWNGLYFDGHPTQEDQQYRHHFVLDKTQVYYEFEILDRSIFHLYKLQPSGNSIGTTWKKYQTRTEVAVGTTIDGYNVCGSYAFCGSNAICMVDASLATCECLKGNVPKFPQQWNMSNWSDGCVRKSSLGCNDTDSFLSYTDIKVPDTSSSWYNQTMNLEECKQFCLKNCSCVAYANLDIRNGGSGCLLWFDHLIDMIQFSRAGQDIYIKVPTSELGNGHGNLNKKKVGISVGVARIIQRNRQRQKVTDLPTFDFSVLVKATDNFSSSNKIGEGGFGSVYMGRLTNGQELAVKRLSKKSKQGLEEFKNEVVLIAKLQHRNLVKLLGCCIQGVEKILVYEFMPNKSLDYFVFGEVRKMMLDWIKHFNIIDGIARGLLYLYQDSRLRIIHRDLKTSNILLDANLNPKISDFGLARTFLGDQLEANTNRVVGT 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121363g00007 624 Gene3D - 2 131 IPR036426 -
Stsc121363g00007 624 Gene3D Phosphorylase Kinase; domain 1 425 534 - -
Stsc121363g00007 624 Gene3D Transferase(Phosphotransferase) domain 1 535 624 - -
Stsc121363g00007 624 SUPERFAMILY alpha-D-mannose-specific plant lectins 56 199 IPR036426 -
Stsc121363g00007 624 Pfam Protein kinase domain 460 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121363g00007 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 580 592 IPR008271 GO:0004672|GO:0006468
Stsc121363g00007 624 SMART serkin_6 459 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121363g00007 624 Gene3D Hepatocyte Growth Factor 322 402 - -
Stsc121363g00007 624 ProSiteProfiles Bulb-type lectin domain profile. 7 128 IPR001480 -
Stsc121363g00007 624 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 7 614 - -
Stsc121363g00007 624 ProSitePatterns Protein kinases ATP-binding region signature. 465 487 IPR017441 GO:0005524
Stsc121363g00007 624 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 535 624 - -
Stsc121363g00007 624 SUPERFAMILY Protein kinase-like (PK-like) 440 624 IPR011009 -
Stsc121363g00007 624 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 2 131 - -
Stsc121363g00007 624 Pfam PAN-like domain 325 391 IPR003609 -
Stsc121363g00007 624 Pfam D-mannose binding lectin 56 160 IPR001480 -
Stsc121363g00007 624 ProSiteProfiles Protein kinase domain profile. 459 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121363g00007 624 SMART blect_4 13 134 IPR001480 -
Stsc121363g00007 624 Pfam S-locus glycoprotein domain 192 303 IPR000858 GO:0048544
Stsc121363g00007 624 CDD B_lectin 14 134 IPR001480 -
Stsc121363g00007 624 ProSiteProfiles PAN/Apple domain profile. 325 407 IPR003609 -
Stsc121363g00007 624 CDD PAN_AP_plant 323 406 - -
Stsc121363g00007 624 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 426 534 - -
Stsc121363g00007 624 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 324 405 - -
Stsc121363g00007 624 SMART ntp_6 326 405 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121363g00007 Stsc-Chr121363 18392 20736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121363g00007 447 624 Receptor kinase-like Gene Family AT4G11530 66.854 4.84e-76 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc121363g00007 Pkinase 9.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121363g00007 - - adu:107464241 1056.59