Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121363g00006 ATGCCTCCCGAGTATGCAGTACATGGACAATATTCAATGAAGTCTGATGTTTTCAGTTACGGTGTCATGGTACTAGAATTGATAAGTGGGAAGAAGAATAGAGAATTCTCAGATCCAGAAAACTATCTTAATCTTCTTGGACACGCATGGAGATTATGGACTGATGAGAAGCCATTGGAACTGCTAGATGAAGTGTTAAAGGAAGGGTGCACAGCACTTCAAGCTGAAGTAGAAAGATGCATTCAGGTGGGATTGTTATGTGTGCAACAAAGAGCAGAAGATAGACCAGACATGTCATCAGTGGTTCTAATGTTAAAGGGTGAGAAGTTACTGCCCAAGCCAAAGGTTCCTGGTTTTTATACTGAAGCAGATTCTTTGATGAAAAATCACACATTGTTTTCAGCCAATGAAATCTCCATCACATCATTATATGCAAGATAG 441 0.3968 MPPEYAVHGQYSMKSDVFSYGVMVLELISGKKNREFSDPENYLNLLGHAWRLWTDEKPLELLDEVLKEGCTALQAEVERCIQVGLLCVQQRAEDRPDMSSVVLMLKGEKLLPKPKVPGFYTEADSLMKNHTLFSANEISITSLYAR 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121363g00006 146 ProSiteProfiles Protein kinase domain profile. 1 111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121363g00006 146 Gene3D Transferase(Phosphotransferase) domain 1 1 116 - -
Stsc121363g00006 146 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 138 - -
Stsc121363g00006 146 Pfam Protein tyrosine and serine/threonine kinase 1 103 IPR001245 GO:0004672|GO:0006468
Stsc121363g00006 146 SUPERFAMILY Protein kinase-like (PK-like) 1 134 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121363g00006 Stsc-Chr121363 17779 18309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121363g00006 1 146 Receptor kinase-like Gene Family AT4G23140 46.497 1.31e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc121363g00006 PK_Tyr_Ser-Thr 3.5e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121363g00006 - - aip:107614885 270.011