LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc121358g00002	ATGGCTCTGGAGTCCCTCGCATGGACATACGATATGTTTATTAGTTTCAGAGGCCAAGATACTCGCTACAGTTTTACTGGCTATCTCTATGAAGCTCTTTGTAATAAAGGAATCCACACCTTCATTGATGATGAGGAGCTTCCAAAAGGAGACGAAATCACACCCTCACTTCTTAGCACAATTCAAGACTCTAGGATTGCCATCGTTGTGCTCTCTCTTAACTATGCTGCTGCTTCTTTTTGCTTAGATGAACTTGTCCAAATCCTTCATTGCATCCAGGAAAATCATCGCTTGGTTTTGCCGATTTTCTATAAGATTGATCCTTTTGATATTCGCCATCTAAACAAGAGTTTCGGAGAGGCTATGGCTAAGCATGAAGAGAGATTCAAGAATGACATGAACAAGGTGCAAAAATGGAAGAAGGCTCTGCATCAAGTAGCCAATCTGTCTGGCTATCATTTCAAATATGGGGATGGATATGAACATAAGTTTGTTAGAAATATTGTGGAAGACATTTCAAGAAAGATTAGGCGTGTACCTTTGCTTGTTGCTGATTATCCAGTTGGACTAGAGTCTCGAGTGTCCGAAGTAATTTCACTTTTGGAAATAGATTCTACTGATCAAGTTCACATGGTAGGGATACATGGAATCGGTGGAATAGGAAAAACAACTCTTGCTCTTGCTGTTTATAACTTGATTGCCGACCATTTCGAAGGTGTGTGCTTTCTTGAAAATGGGAGAGAAAACTCAAGTAAATATGGATTGGTACATCTTCAAAATAAGCTTCTTTGTAAGATATTAGGAAAGGATGGAGTCCAAGTAGAAGGTGTTAGAGAAGGAGGCTCACAGATACAACAAAGGCTTTGTAGAAAGAAGGTTCTTTTGATTCTGGACGATGTTGATGATCGCAAGCAGCTGCAGGCTATTGCTGGAAAACTTGATTGGTTTGGTTGGGGTAGCCGAGTTATTATTACAACACGTGATGCACATTTGCTAAAATGTCATGGCGTTGAAAACACATATAAGGTACAAGGTTTAAATAAGGAAGAGTCTTTGAAATTGCTTATTGAAAATGCTTTCAAAAATGATGATGTTAACCCAAGTTACACGGATGTTTTAATCCGTGCAATAACTTATGCCTCCGGGCTTCCATTGGCTTTGGAAGTAATAGGTTCTCACTTGTTCGGAAAAGGTATTGAAGAATGGAAATCTGCATTGAATGAATTTGAAAAACATTTTGATAATAAAATTCATAAGATACTTCAAGTGAGCTTTAATGCTTTGGGAAAACAAGAGCAGAGTGTTTTTCTTGATATTGCCTGTTGTTTTAAAGGATATACATTAGTACAAGTTACAGATCTACTTCAAGCTCATTATGGGAGTTGCATGAAATATCATATTGGAGTGTTGCTTGATAAATCTCTCATAAATATCAACTGGTGTGATACAAGAGTTACCACACATGATTTGATAGAGGATATGGGGAAAGAAATTGTTCTAAAAGTATCACCGAAAATGCCTGGAAAACGCAGTAGATTATGGTTCTATGAAAATATAGTTAAAGTTTTACAAGATAATCAAGGGTCGAGCGCCATTGAAATCATATATCTTGAATTTCCCTTATTTGAAAGGGAAGCAGATGAAGATTCGTTGATAAAAGAGGGAAATAAAGATGTAGAAGTGAAATGGGATGGAAAAGCTTTGAAAGACATGAAAAATCTGAAAACACTTATTGTAAAAAATGGTTGTTTTTCCGAAAGTCCCAAACATCTTCCAAATAGTTTAAAAGTATTGGAATGGTGGAGATATCCTTCAAAGTATTTTCCGCTTGATTTTCAACCAAAGGAACTCTCCATATTCAAGTTGCCCGATATTCTCTTTATCTCACCCAAGTTGGATAGCTTATCCAAGGCAAGTGTTAAATTGGTGAGCTTGAAAGTTTTGAATTTTGATTACAGTGATTTCATAAAAGAAATACCTGATGTTTCTGGTCTTCAAGCATTACAAGAAATTTCCTTCAGAGGATGCAAAAATTTAGTTACAGTTCACAGTTCAGTTGGTTTTTTAGGTAAACTTAAAATGCTGAATGCTGAATATTGTTGCAAGCTGAGGAGTTTTCCACCTACTATCAAACTGCCCTCACTGGAAGAACTAATTCTATTTGGTTGCTCAAGCCTTGAGAAATTTCCAGAAATTCCAGAAGAGATGGAAAATCTACAAGTGCTTAATTTATATGAGACAGGCATAAAAGATTTGCCATCTTCATTTTGTAATCTTTCTAGATTGCGGCATTTGAATATAGTAGGGGATGCAATGTGTAAGATGCCGATTGTCATTGGCATGATGCCAAAACTAACGTTCTGTGATATCAAGGGAGGAGGCAATAAGGGGAGAGTATCAAGAGAGCAGCAAATGGAAGGACTTCAAGGAATATTCACTCATTTTCACTCCCTCTACTATTCAAATATGATTCGTCTTTGTCTAAGAAACAGCAATTTGTCAGATGAATTTTTTCCACTAGCTGTCGCATGGTTTCCCAATGTGTTACTTTCAGACCTAAGTGGCAATAATTTCAGAGTCCTTCCTGAATGCATCCAAGAATTTCGCTGCCTGCTTACCCTCAACGTGGATCATTGCAAGCATCTTCAGGAGATTAGAGGGATTCCACAACGCTTGATAGGCTTCTCAGCAGTAAACTGCAAATCATTGTCCCCGGGGCACGAGCATATTACTCAACCAGGTTTTGTTATCGGTGAAGTTGATCATTCTTTCTTCTGA	2778	0.3754	MALESLAWTYDMFISFRGQDTRYSFTGYLYEALCNKGIHTFIDDEELPKGDEITPSLLSTIQDSRIAIVVLSLNYAAASFCLDELVQILHCIQENHRLVLPIFYKIDPFDIRHLNKSFGEAMAKHEERFKNDMNKVQKWKKALHQVANLSGYHFKYGDGYEHKFVRNIVEDISRKIRRVPLLVADYPVGLESRVSEVISLLEIDSTDQVHMVGIHGIGGIGKTTLALAVYNLIADHFEGVCFLENGRENSSKYGLVHLQNKLLCKILGKDGVQVEGVREGGSQIQQRLCRKKVLLILDDVDDRKQLQAIAGKLDWFGWGSRVIITTRDAHLLKCHGVENTYKVQGLNKEESLKLLIENAFKNDDVNPSYTDVLIRAITYASGLPLALEVIGSHLFGKGIEEWKSALNEFEKHFDNKIHKILQVSFNALGKQEQSVFLDIACCFKGYTLVQVTDLLQAHYGSCMKYHIGVLLDKSLININWCDTRVTTHDLIEDMGKEIVLKVSPKMPGKRSRLWFYENIVKVLQDNQGSSAIEIIYLEFPLFEREADEDSLIKEGNKDVEVKWDGKALKDMKNLKTLIVKNGCFSESPKHLPNSLKVLEWWRYPSKYFPLDFQPKELSIFKLPDILFISPKLDSLSKASVKLVSLKVLNFDYSDFIKEIPDVSGLQALQEISFRGCKNLVTVHSSVGFLGKLKMLNAEYCCKLRSFPPTIKLPSLEELILFGCSSLEKFPEIPEEMENLQVLNLYETGIKDLPSSFCNLSRLRHLNIVGDAMCKMPIVIGMMPKLTFCDIKGGGNKGRVSREQQMEGLQGIFTHFHSLYYSNMIRLCLRNSNLSDEFFPLAVAWFPNVLLSDLSGNNFRVLPECIQEFRCLLTLNVDHCKHLQEIRGIPQRLIGFSAVNCKSLSPGHEHITQPGFVIGEVDHSFF	925

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc121358g00002	925	FunFam	Disease resistance protein (TIR-NBS-LRR class)	6	178	-	-
	Stsc121358g00002	925	SMART	till_3	9	149	IPR000157	GO:0007165
	Stsc121358g00002	925	ProSiteProfiles	TIR domain profile.	8	176	IPR000157	GO:0007165
	Stsc121358g00002	925	Gene3D	-	6	173	IPR035897	-
	Stsc121358g00002	925	Gene3D	-	174	339	IPR027417	-
	Stsc121358g00002	925	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	176	439	IPR027417	-
	Stsc121358g00002	925	PRINTS	Disease resistance protein signature	211	226	-	-
	Stsc121358g00002	925	PRINTS	Disease resistance protein signature	380	394	-	-
	Stsc121358g00002	925	PRINTS	Disease resistance protein signature	287	301	-	-
	Stsc121358g00002	925	PRINTS	Disease resistance protein signature	710	726	-	-
	Stsc121358g00002	925	Pfam	NB-ARC domain	192	426	IPR002182	GO:0043531
	Stsc121358g00002	925	SUPERFAMILY	Toll/Interleukin receptor TIR domain	7	152	IPR035897	-
	Stsc121358g00002	925	Gene3D	-	345	429	IPR042197	-
	Stsc121358g00002	925	Pfam	TIR domain	10	175	IPR000157	GO:0007165
	Stsc121358g00002	925	Gene3D	Ribonuclease Inhibitor	735	912	IPR032675	-
	Stsc121358g00002	925	Gene3D	Ribonuclease Inhibitor	562	734	IPR032675	-
	Stsc121358g00002	925	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	10	886	IPR044974	GO:0006952
	Stsc121358g00002	925	SUPERFAMILY	"Winged helix" DNA-binding domain	415	524	IPR036390	-
	Stsc121358g00002	925	SUPERFAMILY	L domain-like	564	903	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc121358g00002	Stsc-Chr121358	3801	6870	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc121358g00002	10	767	WRKY Transcription Factor Family	AT4G12020	29.754	4.72e-72	258

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc121358g00002	-		-	aip:107644584	1234.94