Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121358g00002 ATGGCTCTGGAGTCCCTCGCATGGACATACGATATGTTTATTAGTTTCAGAGGCCAAGATACTCGCTACAGTTTTACTGGCTATCTCTATGAAGCTCTTTGTAATAAAGGAATCCACACCTTCATTGATGATGAGGAGCTTCCAAAAGGAGACGAAATCACACCCTCACTTCTTAGCACAATTCAAGACTCTAGGATTGCCATCGTTGTGCTCTCTCTTAACTATGCTGCTGCTTCTTTTTGCTTAGATGAACTTGTCCAAATCCTTCATTGCATCCAGGAAAATCATCGCTTGGTTTTGCCGATTTTCTATAAGATTGATCCTTTTGATATTCGCCATCTAAACAAGAGTTTCGGAGAGGCTATGGCTAAGCATGAAGAGAGATTCAAGAATGACATGAACAAGGTGCAAAAATGGAAGAAGGCTCTGCATCAAGTAGCCAATCTGTCTGGCTATCATTTCAAATATGGGGATGGATATGAACATAAGTTTGTTAGAAATATTGTGGAAGACATTTCAAGAAAGATTAGGCGTGTACCTTTGCTTGTTGCTGATTATCCAGTTGGACTAGAGTCTCGAGTGTCCGAAGTAATTTCACTTTTGGAAATAGATTCTACTGATCAAGTTCACATGGTAGGGATACATGGAATCGGTGGAATAGGAAAAACAACTCTTGCTCTTGCTGTTTATAACTTGATTGCCGACCATTTCGAAGGTGTGTGCTTTCTTGAAAATGGGAGAGAAAACTCAAGTAAATATGGATTGGTACATCTTCAAAATAAGCTTCTTTGTAAGATATTAGGAAAGGATGGAGTCCAAGTAGAAGGTGTTAGAGAAGGAGGCTCACAGATACAACAAAGGCTTTGTAGAAAGAAGGTTCTTTTGATTCTGGACGATGTTGATGATCGCAAGCAGCTGCAGGCTATTGCTGGAAAACTTGATTGGTTTGGTTGGGGTAGCCGAGTTATTATTACAACACGTGATGCACATTTGCTAAAATGTCATGGCGTTGAAAACACATATAAGGTACAAGGTTTAAATAAGGAAGAGTCTTTGAAATTGCTTATTGAAAATGCTTTCAAAAATGATGATGTTAACCCAAGTTACACGGATGTTTTAATCCGTGCAATAACTTATGCCTCCGGGCTTCCATTGGCTTTGGAAGTAATAGGTTCTCACTTGTTCGGAAAAGGTATTGAAGAATGGAAATCTGCATTGAATGAATTTGAAAAACATTTTGATAATAAAATTCATAAGATACTTCAAGTGAGCTTTAATGCTTTGGGAAAACAAGAGCAGAGTGTTTTTCTTGATATTGCCTGTTGTTTTAAAGGATATACATTAGTACAAGTTACAGATCTACTTCAAGCTCATTATGGGAGTTGCATGAAATATCATATTGGAGTGTTGCTTGATAAATCTCTCATAAATATCAACTGGTGTGATACAAGAGTTACCACACATGATTTGATAGAGGATATGGGGAAAGAAATTGTTCTAAAAGTATCACCGAAAATGCCTGGAAAACGCAGTAGATTATGGTTCTATGAAAATATAGTTAAAGTTTTACAAGATAATCAAGGGTCGAGCGCCATTGAAATCATATATCTTGAATTTCCCTTATTTGAAAGGGAAGCAGATGAAGATTCGTTGATAAAAGAGGGAAATAAAGATGTAGAAGTGAAATGGGATGGAAAAGCTTTGAAAGACATGAAAAATCTGAAAACACTTATTGTAAAAAATGGTTGTTTTTCCGAAAGTCCCAAACATCTTCCAAATAGTTTAAAAGTATTGGAATGGTGGAGATATCCTTCAAAGTATTTTCCGCTTGATTTTCAACCAAAGGAACTCTCCATATTCAAGTTGCCCGATATTCTCTTTATCTCACCCAAGTTGGATAGCTTATCCAAGGCAAGTGTTAAATTGGTGAGCTTGAAAGTTTTGAATTTTGATTACAGTGATTTCATAAAAGAAATACCTGATGTTTCTGGTCTTCAAGCATTACAAGAAATTTCCTTCAGAGGATGCAAAAATTTAGTTACAGTTCACAGTTCAGTTGGTTTTTTAGGTAAACTTAAAATGCTGAATGCTGAATATTGTTGCAAGCTGAGGAGTTTTCCACCTACTATCAAACTGCCCTCACTGGAAGAACTAATTCTATTTGGTTGCTCAAGCCTTGAGAAATTTCCAGAAATTCCAGAAGAGATGGAAAATCTACAAGTGCTTAATTTATATGAGACAGGCATAAAAGATTTGCCATCTTCATTTTGTAATCTTTCTAGATTGCGGCATTTGAATATAGTAGGGGATGCAATGTGTAAGATGCCGATTGTCATTGGCATGATGCCAAAACTAACGTTCTGTGATATCAAGGGAGGAGGCAATAAGGGGAGAGTATCAAGAGAGCAGCAAATGGAAGGACTTCAAGGAATATTCACTCATTTTCACTCCCTCTACTATTCAAATATGATTCGTCTTTGTCTAAGAAACAGCAATTTGTCAGATGAATTTTTTCCACTAGCTGTCGCATGGTTTCCCAATGTGTTACTTTCAGACCTAAGTGGCAATAATTTCAGAGTCCTTCCTGAATGCATCCAAGAATTTCGCTGCCTGCTTACCCTCAACGTGGATCATTGCAAGCATCTTCAGGAGATTAGAGGGATTCCACAACGCTTGATAGGCTTCTCAGCAGTAAACTGCAAATCATTGTCCCCGGGGCACGAGCATATTACTCAACCAGGTTTTGTTATCGGTGAAGTTGATCATTCTTTCTTCTGA 2778 0.3754 MALESLAWTYDMFISFRGQDTRYSFTGYLYEALCNKGIHTFIDDEELPKGDEITPSLLSTIQDSRIAIVVLSLNYAAASFCLDELVQILHCIQENHRLVLPIFYKIDPFDIRHLNKSFGEAMAKHEERFKNDMNKVQKWKKALHQVANLSGYHFKYGDGYEHKFVRNIVEDISRKIRRVPLLVADYPVGLESRVSEVISLLEIDSTDQVHMVGIHGIGGIGKTTLALAVYNLIADHFEGVCFLENGRENSSKYGLVHLQNKLLCKILGKDGVQVEGVREGGSQIQQRLCRKKVLLILDDVDDRKQLQAIAGKLDWFGWGSRVIITTRDAHLLKCHGVENTYKVQGLNKEESLKLLIENAFKNDDVNPSYTDVLIRAITYASGLPLALEVIGSHLFGKGIEEWKSALNEFEKHFDNKIHKILQVSFNALGKQEQSVFLDIACCFKGYTLVQVTDLLQAHYGSCMKYHIGVLLDKSLININWCDTRVTTHDLIEDMGKEIVLKVSPKMPGKRSRLWFYENIVKVLQDNQGSSAIEIIYLEFPLFEREADEDSLIKEGNKDVEVKWDGKALKDMKNLKTLIVKNGCFSESPKHLPNSLKVLEWWRYPSKYFPLDFQPKELSIFKLPDILFISPKLDSLSKASVKLVSLKVLNFDYSDFIKEIPDVSGLQALQEISFRGCKNLVTVHSSVGFLGKLKMLNAEYCCKLRSFPPTIKLPSLEELILFGCSSLEKFPEIPEEMENLQVLNLYETGIKDLPSSFCNLSRLRHLNIVGDAMCKMPIVIGMMPKLTFCDIKGGGNKGRVSREQQMEGLQGIFTHFHSLYYSNMIRLCLRNSNLSDEFFPLAVAWFPNVLLSDLSGNNFRVLPECIQEFRCLLTLNVDHCKHLQEIRGIPQRLIGFSAVNCKSLSPGHEHITQPGFVIGEVDHSFF 925
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc121358g00002 925 FunFam Disease resistance protein (TIR-NBS-LRR class) 6 178 - -
Stsc121358g00002 925 SMART till_3 9 149 IPR000157 GO:0007165
Stsc121358g00002 925 ProSiteProfiles TIR domain profile. 8 176 IPR000157 GO:0007165
Stsc121358g00002 925 Gene3D - 6 173 IPR035897 -
Stsc121358g00002 925 Gene3D - 174 339 IPR027417 -
Stsc121358g00002 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 439 IPR027417 -
Stsc121358g00002 925 PRINTS Disease resistance protein signature 211 226 - -
Stsc121358g00002 925 PRINTS Disease resistance protein signature 380 394 - -
Stsc121358g00002 925 PRINTS Disease resistance protein signature 287 301 - -
Stsc121358g00002 925 PRINTS Disease resistance protein signature 710 726 - -
Stsc121358g00002 925 Pfam NB-ARC domain 192 426 IPR002182 GO:0043531
Stsc121358g00002 925 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 152 IPR035897 -
Stsc121358g00002 925 Gene3D - 345 429 IPR042197 -
Stsc121358g00002 925 Pfam TIR domain 10 175 IPR000157 GO:0007165
Stsc121358g00002 925 Gene3D Ribonuclease Inhibitor 735 912 IPR032675 -
Stsc121358g00002 925 Gene3D Ribonuclease Inhibitor 562 734 IPR032675 -
Stsc121358g00002 925 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 886 IPR044974 GO:0006952
Stsc121358g00002 925 SUPERFAMILY "Winged helix" DNA-binding domain 415 524 IPR036390 -
Stsc121358g00002 925 SUPERFAMILY L domain-like 564 903 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc121358g00002 Stsc-Chr121358 3801 6870 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121358g00002 10 767 WRKY Transcription Factor Family AT4G12020 29.754 4.72e-72 258
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121358g00002 - - aip:107644584 1234.94