Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121356g00001 ATGGAGGAACCACCTCCAGCCAAGCGCCCTAAAATTGTCAGGGGGGATGATGATTATATGCCCGGAAACATTCTTGAGATTGAGCTTTCTAAGTTCATGACCTTTGATAAATTTAAATGCAAACCTGGGCCTCGATTGAATCTTGTAGTTGGACCCAATGGTTCTGGAAAAAGTTCTCTCGTGTGTGCTATTGCACTTGGCCTTTGCGGAGAGCCCCAGTTGCTTGGGCGAGCAACTAGTGTTGGGGCATATGTAAAGCGGGGAGAAGAGTCTGGATCTATTAAGATTACATTGAGAGGGAATAGTAAGGATGAGGTTATTGTCATTACTCGCAAAATAAATACTAACAACAAGTCTGAGTATTTGTTAAATGGGAATATAGTTCCCAGAACTAATGTAGCTGAAGCCGTTAAAAGGTTTAACATCCAAGTCAATAACTTGACACAATTTTTACCACAAGACAGGGTTTGTGAGTTTGCAAAGTTAACTCCAGTCCAGCTTCTGGAAGAAACTGAAAAGGCTGTTGGTGATCCACAACTTCCCGAGCAACATCGTGCACTAGTTGATAAAAGTTTTGTATTGAAGAGTATTGAAGTTTCTATGGAGAGACATAAAGGAACCTTGAATCAGTTAAAGCAACAAAATGCTGAACTAGAGAAGGATGTTGAGCGTGTCCGTCTAAGAGATGAGATTCTTGCCAAGGCTGATACCATGAAAAAGAAATTGCCTTGGCTTGACTATGACTCGAAGAAGGCTCAATATTTGGAAGCTAAGCAACGTGAGAATAATGCGGCGAAGGCAATGGAGGAAGCTGCAAAGTTACTAAATGATCTCAAGGAACCTATTAAGAAACAGAAGGAGGAACAGGCCGTATTAGATGGGAAATGGAAAAAGGTCGACACCCATATAAATGAGAACTTCCAGAAGCGAGCTGAACATCTTGCTAACGCGGACCAACTGGATGTGGAGCTGCAAGGGAAGTACAAGGCTATGCAAAATTTGAGAAAAGAGGAAGAAACCAGGCAAAAAGATCTTGAAAGAATTAGGAAGGAACTTGCTGCTGCTGAACTTGAACTTGAGAATCTAGGTCCTTCTGATCCTGGTCGACAAGAAGAGATGAAAAGACTAAGAGCTGAAATCTCTGATATTGATTATGAAGCTAATCAAGTGTTGAAGCCTCGCATATCTCATGTAGAGAGTGAAATACGTCGTAAAATGGAATCCTTGAATACATGTAAAGAAAGGATGAAGGGCATGGACAATAAAGTTACAAAATATTTGGATGTATTGCGAGACGCAGGGACAGGCAAGATTTTTGAAGCCTATAATTGGGTCCAAGAACATCATAAAATCTTCAAGAAGGAGGTTTATGGCCCAGTATTAGTAGAGGTGAATGTCCAAGATCGAGGTCATGCTGCTTATCTAGAGGGTCAAGCTGCACAATATATTTGGAAGTCGTTCATAACACAAGATCCTGATGATCGGGACCTCTTGGTGAAGAACCTAAAATGCTTTGATGTTCCAGTTTTAAATTATACTGGTGATGTTGACCAACGAAGAGGGACTTTTGGAATTCGAAATGATATGCGTGCCCTTGGCATTTACTCCCGACTGGACCAAGTCTTTGATGCTCCGATTGCTGTCAAGGAGGTTTTGATTCGCCAGTTTAATTTGGATAATTCTTATATTGGATCCAAAGTTACTGATGAGAGGGCTGACGAGGTTCCAAAATTGGGAATTTATAATTTGTGGACACCGGAAAATCACTACGTGTGGTCTAAGTCTAAATATGGAAGTCATATGTCAGCCGTGGTCGAACAAGTGGGAGTCCCAAAGTTTATAGAGAATAGTTCAAATGCCGGAGAAAATGAGAAGCTGAAATCCCAGGAAAGGGATCTTGAAGCAAGTATTGCTACCTTGGATGATGATGCTAAGAGATCTAGAGATAAGCAGAAATTCTTATTTAATAAATCTGCCGAACTTCGTAGAAAGAGGGAGGAGATTTCTAAATTATTCCAAGAAGAGAAAGAAAAACGTGCTGGTATTCTCCGTCGTATTGAGAAAAAGAGAGATGAACTGAAATCATTGGAGGAGCCCATTGATAGAGATGCCGAGATAGCAAAGTTTGTTGATCTAGCAAATAATCTTAACATTCAGAGATTCCGTAATGCGATGAAACTAAAGGAACTTCTCATTGAGTGTGTTGCTTATAGAAGAAGCTTTATTGAAAAGCGGATATCTTCGATTGAATTTGATGCTAAGATTAGAAAATTGGAGGCAGATCTAAAGCAGCATGAGGGGGTTGCCATTCAGGCAACTATGCAATTTCAGAACTTTGAGAAAGAGACTGAGAGTTGTCAACAGCAGCTGAAAAAATCGAAAAATATTGCTGAATCAATTGCACCATTGACACCTGAGCTAGAGAACGAATTTCACAAGATGCCCACTACAATTGAGGATTTAAATACTGCTATCCGAGAAACAATCTATGAAGCCAGGTCAATATTTACACTTAATAATAATGCATTGGAGGAGTATGAGGATCGGCGACAAAAGATAGAAGAGCTTGCAGCAAAACTTGCTGCAGAGGAGGAAGAACATGGAAGGTCTAATACTGAAATTGAGGAAATTAAGGATAAATGGCTTCCAGCACTTCGAAACCTTGTGGCGCAGATAAATGAAACTTTTAGCCGTAATTTTCAAGAGATGGCTGTTGCTGGCGAAGTTTCACTAGATGAGCGTGATAAGGAATATGGCCAGTATGGAATTTGTATTAAAGTCAAATTCAGACAAAATGGAAAACTTGAAGTTCTTAGTGCACATCATCAATCTGGAGGGGAGCGATCAGTTTCAACTATCGTATATCTTCTTTCCCTTCAGGATCTTACAAATGTCCCATTTAGAGTTGTTGATGAAATCAACCAGGGCATGGACCAAATAAACGAAAGAAAGATGTTCCAGCAACTAGTCAGAGCTGCAACCAAGCCGAATACGCCACAGTGCTTCTTGCTTACCCCCAAATTGCTTCCAAACCTTCAATATAGTGAAGCATGCTCCATATTGACTGTGATGAATGGCCCTTGGATTCGCCAACCCACAGACAGTAATCTCTCAACCCTTTATGGAAGGAAGGTGAACCATATGGTATTGTCTGCCGTCCCTTGGGGAAAACCCAATGTTGAAGGTACAACAAGCAGGTGTATGTGA 3207 0.4069 MEEPPPAKRPKIVRGDDDYMPGNILEIELSKFMTFDKFKCKPGPRLNLVVGPNGSGKSSLVCAIALGLCGEPQLLGRATSVGAYVKRGEESGSIKITLRGNSKDEVIVITRKINTNNKSEYLLNGNIVPRTNVAEAVKRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPEQHRALVDKSFVLKSIEVSMERHKGTLNQLKQQNAELEKDVERVRLRDEILAKADTMKKKLPWLDYDSKKAQYLEAKQRENNAAKAMEEAAKLLNDLKEPIKKQKEEQAVLDGKWKKVDTHINENFQKRAEHLANADQLDVELQGKYKAMQNLRKEEETRQKDLERIRKELAAAELELENLGPSDPGRQEEMKRLRAEISDIDYEANQVLKPRISHVESEIRRKMESLNTCKERMKGMDNKVTKYLDVLRDAGTGKIFEAYNWVQEHHKIFKKEVYGPVLVEVNVQDRGHAAYLEGQAAQYIWKSFITQDPDDRDLLVKNLKCFDVPVLNYTGDVDQRRGTFGIRNDMRALGIYSRLDQVFDAPIAVKEVLIRQFNLDNSYIGSKVTDERADEVPKLGIYNLWTPENHYVWSKSKYGSHMSAVVEQVGVPKFIENSSNAGENEKLKSQERDLEASIATLDDDAKRSRDKQKFLFNKSAELRRKREEISKLFQEEKEKRAGILRRIEKKRDELKSLEEPIDRDAEIAKFVDLANNLNIQRFRNAMKLKELLIECVAYRRSFIEKRISSIEFDAKIRKLEADLKQHEGVAIQATMQFQNFEKETESCQQQLKKSKNIAESIAPLTPELENEFHKMPTTIEDLNTAIRETIYEARSIFTLNNNALEEYEDRRQKIEELAAKLAAEEEEHGRSNTEIEEIKDKWLPALRNLVAQINETFSRNFQEMAVAGEVSLDERDKEYGQYGICIKVKFRQNGKLEVLSAHHQSGGERSVSTIVYLLSLQDLTNVPFRVVDEINQGMDQINERKMFQQLVRAATKPNTPQCFLLTPKLLPNLQYSEACSILTVMNGPWIRQPTDSNLSTLYGRKVNHMVLSAVPWGKPNVEGTTSRCM 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121356g00001 1068 Coils Coil 839 880 - -
Stsc121356g00001 1068 Pfam RecF/RecN/SMC N terminal domain 24 994 IPR003395 -
Stsc121356g00001 1068 Coils Coil 251 288 - -
Stsc121356g00001 1068 Coils Coil 317 358 - -
Stsc121356g00001 1068 Coils Coil 194 228 - -
Stsc121356g00001 1068 FunFam Structural maintenance of chromosomes 5 850 1021 - -
Stsc121356g00001 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 661 1005 IPR027417 -
Stsc121356g00001 1068 Coils Coil 755 775 - -
Stsc121356g00001 1068 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 5 1037 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Stsc121356g00001 1068 Coils Coil 623 643 - -
Stsc121356g00001 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 315 IPR027417 -
Stsc121356g00001 1068 Coils Coil 658 692 - -
Stsc121356g00001 1068 Gene3D - 843 1023 IPR027417 -
Stsc121356g00001 1068 Gene3D - 23 231 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121356g00001 Stsc-Chr121356 7824 28808 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121356g00001 7 1033 Structural Maintenance of Chromosomes family AT5G15920 55.988 0.0 1130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121356g00001 K22803 - gmx:100778678 1340.48