Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121354g00004 ATGGCGGTGATTGATAAAAAAGATCATCAGTTTCCAAAAGGAATGCATGTTCTTGCTGTTGATGATGATCGAACATGTCTTGTGGTTTTGAAGGCTGCGCTTCAAAAGTGTCATTATCAAGTAACTACCACAAACAGTGCAATAACAGCACTGAAGTTATTGAGAGAGAAGAAGAACAAGTTTGATCTGGTAATCAGTGATGTTCACATGCCAGACATGGATGGTTTCAAGCTTCTTGAGCTTGTTGGACTTGAAATGGACTTACCTGTCATAATGTTGTCTGTGAATGATGATCCAAGAGTGATGATGAAGGGAATCATGCATGGAGCATGTTTCTATCTTATTAAACCTGTTAAAATTGAGGAGCTCAAGAACATTTGGCAGCATGTTATTAGAAGGAACAAGGTTGATTCTAAGGACCCAGAAAAAGCCATTAACAACCATGAAAATCCAGATTCTAGTAGTGGTGGTGGTAGCGGCAATGAACTTATTACAGGTGGTGTTTCAGAACAGAGTTCAAAGCCAAGCAGGAAGAGAAAGGAACAAGATGAGGATGAAGACCAGGAGGAGGACCATGAAAATGGCAATGACAACGACAATGGCGAGGATCCATCCGCTCAAAAGAAGCCTCGCGTTGTTTGGTCCCTGGAGCTGCACCGCAAGTTTGTAGCCGCGGTCGAGCAATTAGGCACTGACAAGGCTGTACCTAAGAAAATTCTTGACTTGATGAATGTTGAAAAGCTTACGAGGGAGAATGTGGCTAGTCATCTTCAGAAATATAGGCTTTTCCTGAGAAGAGTGAACAACATAACAAACCAACAACACTCTAACATTGGATCAAGCTTTAGCAATGGAGACACATCATCATATCTTAGAATGAGTCCTCTAACTGGAATTGGACAATTACAAACACTCAATAACTCTGCTTATGGCTTAAGATCTTTCTCACCTTCAAACATGATTGGTAGGTTGAACACTCCTTCAGGTCTCACTTCACATGGTTTCAACTCCAATGACAATCAATTTCAGTTCCCTTCATCCGGGTTGCTCGGCCGCCCCGGCGGAAATACTAATCAGATTTTTCTCTCTGGAGGAGGACTTAACTCTGTTCAAAACTTCAGCACTGTCTTTGATCCTAAACAGAGTTTTAGTAGACAGAAACCGATGTCCGGCGGGGGTTCAAGCTCGCCGATTTTGGGAGTTTCCAACAATGGTTTGATCTTGGAACATCAGAATCATCATCATCATCATCAAGGTGGAATCTATGATAACAATCCAATTTCAGTAGGATCTTCTTCCCAAGAACAAATCTCATTCCCTTCTTTACTTGATCATCATCATCATCACCATCATCATGGTAATAATAGTTGCAACAATGATATTTGGTCAAATGAATGCAACAATTTGATGAACTCTCCAACTTTTCAAGGTGGGAATCTCAGTGGTGCTTCATCAATCACTTCACTGTCTAGCCAATCCCATGATTCATTCACTGATCTGAATTTCACCAGCAATAACAACAACAACAATGTGCAATTTCAAGGGTGGAATAACAATAATAATAATAATCAGAATGGAAATTACCATCCATTGAGTGGTCTTATTGATCCATTTTCAAGCTCAAGCTTCAACAGAAACATGGAGTTTGATTTTTGTGATGCAGCACAAATGAAGCATGATGGGGTTATTGATTTGACTGAAGATTCTTCACTGAAATCACAACATCAGTTGTACAAGACTCTCAACACTCACATTTCTAATAATGCTGGTTCCTTGGAAGATTTTGTCACTGAAATTATGAAACAGAAACAAGACAAGATAAAATTGCCAGAAGGAGACTTCTTATGTGACAATTACTCTCCTGGTGGAACATCTATGTGA 1881 0.3993 MAVIDKKDHQFPKGMHVLAVDDDRTCLVVLKAALQKCHYQVTTTNSAITALKLLREKKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSVNDDPRVMMKGIMHGACFYLIKPVKIEELKNIWQHVIRRNKVDSKDPEKAINNHENPDSSSGGGSGNELITGGVSEQSSKPSRKRKEQDEDEDQEEDHENGNDNDNGEDPSAQKKPRVVWSLELHRKFVAAVEQLGTDKAVPKKILDLMNVEKLTRENVASHLQKYRLFLRRVNNITNQQHSNIGSSFSNGDTSSYLRMSPLTGIGQLQTLNNSAYGLRSFSPSNMIGRLNTPSGLTSHGFNSNDNQFQFPSSGLLGRPGGNTNQIFLSGGGLNSVQNFSTVFDPKQSFSRQKPMSGGGSSSPILGVSNNGLILEHQNHHHHHQGGIYDNNPISVGSSSQEQISFPSLLDHHHHHHHHGNNSCNNDIWSNECNNLMNSPTFQGGNLSGASSITSLSSQSHDSFTDLNFTSNNNNNNVQFQGWNNNNNNNQNGNYHPLSGLIDPFSSSSFNRNMEFDFCDAAQMKHDGVIDLTEDSSLKSQHQLYKTLNTHISNNAGSLEDFVTEIMKQKQDKIKLPEGDFLCDNYSPGGTSM 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121354g00004 626 FunFam Two-component response regulator 205 268 - -
Stsc121354g00004 626 Pfam Response regulator receiver domain 17 125 IPR001789 GO:0000160
Stsc121354g00004 626 MobiDBLite consensus disorder prediction 137 209 - -
Stsc121354g00004 626 Gene3D - 15 200 - -
Stsc121354g00004 626 MobiDBLite consensus disorder prediction 381 435 - -
Stsc121354g00004 626 Gene3D - 205 268 - -
Stsc121354g00004 626 MobiDBLite consensus disorder prediction 381 408 - -
Stsc121354g00004 626 Pfam Myb-like DNA-binding domain 211 261 IPR001005 -
Stsc121354g00004 626 SUPERFAMILY Homeodomain-like 207 266 IPR009057 -
Stsc121354g00004 626 PIRSF RR_ARR_type-B 1 623 IPR017053 GO:0003677|GO:0003700|GO:0009736
Stsc121354g00004 626 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 372 IPR045279 GO:0009736
Stsc121354g00004 626 NCBIfam myb-like DNA-binding domain, SHAQKYF class 209 263 IPR006447 GO:0003677
Stsc121354g00004 626 SUPERFAMILY CheY-like 13 135 IPR011006 -
Stsc121354g00004 626 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 265 IPR017930 -
Stsc121354g00004 626 SMART REC_2 15 127 IPR001789 GO:0000160
Stsc121354g00004 626 ProSiteProfiles Response regulatory domain profile. 16 131 IPR001789 GO:0000160
Stsc121354g00004 626 CDD REC_typeB_ARR-like 17 131 - -
Stsc121354g00004 626 MobiDBLite consensus disorder prediction 148 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121354g00004 Stsc-Chr121354 28392 33032 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121354g00004 10 337 Response Regulator Gene Family AT2G25180 55.723 8.46e-107 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Stsc121354g00004 Response_reg 1.6e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121354g00004 - K14491 adu:110273068 913.679