Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121354g00002 ATGCCATCATTGGATGAAATTGCAATGCATATTAACTTCTCTTGTGGAGGTTTGCCTCCTGTGCCTTCATTGCCTAAGCGTGAGACATCACCAACTCAGAATGGAGATATGATGTCACCAAAACGGCCTTGTACCGAATATCGAAATGTGTTGGAGCGAAATTCTCTTACTTCCCCGGTGAAAGATCGGCTTCTTGCACTCAGCAACCTTAAGTCAAAGCTACCCCCACCTCCTTTACAGTCAGCATTTGCCAGTCCAACAAAACCAATTCCAGGGGGTGGAGGGGAAACATGTGCGGAAACTGGGATCAATATCTTTTTTGGCAAGATTTCTCAACTGAACCTAACTTTCAAGGAGATCATATGCAACTATAGAAAGCAGCCACAGTGCAAACCGCAAGTCTTTCGCAATGTATTTGTGGATTGGTCATTGACTCGCCGTAATGGGAGAAGAGGACAGGAGCATGTGGATATCATTGCATTCTACAACGAAGTATTCATTCCCACTGTGAAGCCACTTCTGGTTGAACTTGGGCCGGCGGAAACCACTACGAAAAACAGCAGGATGCCTGAAGTTAATATTAAAAATGATGCTCAATGTCCTGGATCTCCTAAAATATCACCTTTCCCAAGTCTTCCAGATATGTCACCAAAAAAAGTGTCCGCCACACGCAATGTATATGTCTCTCCACTACGATCATCCAAGATGGATGCTCTAATATCACATAGCTCAAAAAGCTATTATGCATGTGTTGGAGAGAGCACCCATGCATATCAGAGCCCTTCAAAAGATCTGACCGCCATCAATAACCGTTTGAATGGCAACCGGAAGGTCAGAGGTTCACTGAATTTCGATGACATGGATGTCGGATTGGTTAGTGACTCAATGGTTGCAAATAGCCTATATCTGCAAAATGGAAGCTGTGCATCATCGTCAGGTGCACCAATGAAGTCTGAGCAACCTGACTCTTAA 972 0.4424 MPSLDEIAMHINFSCGGLPPVPSLPKRETSPTQNGDMMSPKRPCTEYRNVLERNSLTSPVKDRLLALSNLKSKLPPPPLQSAFASPTKPIPGGGGETCAETGINIFFGKISQLNLTFKEIICNYRKQPQCKPQVFRNVFVDWSLTRRNGRRGQEHVDIIAFYNEVFIPTVKPLLVELGPAETTTKNSRMPEVNIKNDAQCPGSPKISPFPSLPDMSPKKVSATRNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGSLNFDDMDVGLVSDSMVANSLYLQNGSCASSSGAPMKSEQPDS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121354g00002 323 SUPERFAMILY Cyclin-like 109 211 IPR036915 -
Stsc121354g00002 323 Gene3D - 105 194 - -
Stsc121354g00002 323 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 1 113 IPR028309 GO:0006357|GO:0051726
Stsc121354g00002 323 MobiDBLite consensus disorder prediction 19 43 - -
Stsc121354g00002 323 MobiDBLite consensus disorder prediction 194 218 - -
Stsc121354g00002 323 Pfam Retinoblastoma-associated protein B domain 108 171 IPR002719 GO:0005634|GO:0051726
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121354g00002 Stsc-Chr121354 13026 16124 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121354g00002 1 323 Core Cell Cycle Gene Families AT3G12280 51.399 1.93e-97 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Stsc121354g00002 RB_B 7.5e-15 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121354g00002 K04681 - egr:104454522 459.914