Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121348g00003 ATGGATCTCTCTAAGAAGCGTAAAACTGACGAGAACGGCGACGCTGATTCCTCCCCGCCTCAACAACCTCCCCCTTCCGCCCTCTCCGCAGACGACATCCGCAAGATCCTCCAGCCCTTCACGCAGGACCAGCTCCTCGACCTCCTCCAATCAGCCTCCCTCCGCCACCCTGATGTCTTCGACTCCGTCCGCTCCCTCGCCGACCGCGACTCCACACTCCGAAAGCTATTCGTCCGCGGCCTCGCCGCCGACACCACCACGGACACTATCCGCGCCATCTTCTCCGCCTACGGCGACCTTGACGAAGCTATCGTCATCTTTGACAAGAACACCGGAAAATCTAAGGGCTACGGCTTCGTCACCTTCTCCCACGTCGACGGCGCCGTCCTCGCCCTCAAGGATCCCAGCAAGAAAATCGACGGCCGCATGACCGTCACACAGCTTGCCGCCTCCGGTGGACCTGGCGCCGCCTCAGCTACCGACGTAGCCGCACGGAAGGTTTTTGTAGGTAACGTTCCATTCGAAATCCCATCGGAGAGGCTCTTGAGCCACTTTCTTGCGTACGGTGAGGTAGAAGAAGGTCCTTTAGGTTTTGATAAGAGTAGCGGTAAAACAAGAGGGTTTGCGTTCTTCGTGTACAAGACTGAAGAAGGGGCTAGGGCTTGTTTGGCAGAGCCAACGAAGACAATTGATGGCCACCAAGTGTTCTGCAAGTTGGCCGTGGATAACAAGAAATCAAAGCCGCAGAACCCTGCTTCTGGCTTTGGCGGGGATGGTATGCATGTTCAGCAGCAGCAGCAACAACAACAGCAACCTCCTTACAATGCTCCTATGTTGATTTCTCAGTACGGTGGATATGCTGGCGGTGGTGGGCATGGTAACGGTTATGGGATGCAGCCTTCAGTGCCGTCTTATGGAAACCCTGTTCCGGCTGGTGGTGGCGGTGTTGGTGGGTACGGGACTACAGGTGGCGGTTATGGGAATCCGCAGTATGGAGGGCCGGTTTCCGGTGAGTATGGTGCGAGGTTGCCTCCTACTTCCGGTGGGTTTATGGATGGCTCTCATTATGGTGGTTTACACTCGTCTGCAATTCCGTCGCAGCAGCCGCATTCTGTGCCGATGGCAAGACCTGCCCCTCCTGGAGGAATGTACCAAGGCGTGCCGCCCTATTATTGA 1176 0.5663 MDLSKKRKTDENGDADSSPPQQPPPSALSADDIRKILQPFTQDQLLDLLQSASLRHPDVFDSVRSLADRDSTLRKLFVRGLAADTTTDTIRAIFSAYGDLDEAIVIFDKNTGKSKGYGFVTFSHVDGAVLALKDPSKKIDGRMTVTQLAASGGPGAASATDVAARKVFVGNVPFEIPSERLLSHFLAYGEVEEGPLGFDKSSGKTRGFAFFVYKTEEGARACLAEPTKTIDGHQVFCKLAVDNKKSKPQNPASGFGGDGMHVQQQQQQQQQPPYNAPMLISQYGGYAGGGGHGNGYGMQPSVPSYGNPVPAGGGGVGGYGTTGGGYGNPQYGGPVSGEYGARLPPTSGGFMDGSHYGGLHSSAIPSQQPHSVPMARPAPPGGMYQGVPPYY 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121348g00003 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 246 IPR000504 GO:0003723
Stsc121348g00003 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 234 IPR000504 GO:0003723
Stsc121348g00003 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 142 IPR000504 GO:0003723
Stsc121348g00003 391 PANTHER GEO13361P1-RELATED 161 330 - -
Stsc121348g00003 391 MobiDBLite consensus disorder prediction 1 29 - -
Stsc121348g00003 391 SUPERFAMILY RNA-binding domain, RBD 64 154 IPR035979 GO:0003676
Stsc121348g00003 391 SUPERFAMILY RNA-binding domain, RBD 160 261 IPR035979 GO:0003676
Stsc121348g00003 391 Gene3D - 159 273 IPR012677 -
Stsc121348g00003 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 151 IPR000504 GO:0003723
Stsc121348g00003 391 SMART rrm1_1 166 238 IPR000504 GO:0003723
Stsc121348g00003 391 SMART rrm1_1 75 147 IPR000504 GO:0003723
Stsc121348g00003 391 MobiDBLite consensus disorder prediction 244 273 - -
Stsc121348g00003 391 Gene3D - 4 158 IPR012677 -
Stsc121348g00003 391 MobiDBLite consensus disorder prediction 259 273 - -
Stsc121348g00003 391 FunFam UBP1-associated protein 2C isoform A 57 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121348g00003 Stsc-Chr121348 11167 14444 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121348g00003 161 253 C2H2 Transcription Factor Family AT2G19380 35.789 1.90e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121348g00003 K12741 - gmx:100804230 439.113