Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121348g00002 ATGGTTTATACCTTTTATAATACCTCGAATTCTTCTTTGCCTAGCTCCAATTTTTCATCAAGGTTTATTAGTCCTTCTTTGCATAACTATGGAGCTTCCTGTGGTGTTCTGGAACCATCAAATACATTGAATTTGGAGAGTAGTGAAAAGATAGAACAGCAAGTGAATAATAATAATAATAATGGATCAGAAGCTGAAATTAGGGTAGGAAAGAATAATAATAATGATGAGGACTCTGATGCAAAAGCCATAGCTGCTTTGAAGAATCATAGTGAAGCTGAGAGGAGGAGGAGGGAGAGAATCAATGGACATCTCGCAACTTTGCGAGGTCTTGTTTCCTCCACTGACAAGATGGACAAAGCAACAATATTGGCTAAAGTAATTAGCCAAGTTAAGGAATTGAAGAAGAATGCAATGGAAGCAAGTAAAGGTCTTCTAATCCCAACAGATTTTGATGAAGTTGAAGTTGAACCATACGAAGATGGAGGAGTAGGAGATCATGGATCCATGTCATACAAGGCATCCATCTGCTGCGATTACCGGCCGGAGATTGTCTCGGACCTGCGACACACTATTGATGCCCTTGAACTGCAACTGGTGAGGGCAGAGATATCAACCTTAGAAGGCAGAATGAAAAATGTGTTTGTGTATAGATGTTGCAAAGGGAAAGGCCACAATAATAACACCGATGCATGTCAAGCTCTTGCAAGAAATGTTCAAAAGGCACTGAGTTGTGTAATAGATAAGGCTACTAATTCACTTGAGTACTCAGTGAGAGCATCACTTCCAAGTAAGAGGAGAAGAATCTGCTTACTTGAGGATTGA 825 0.3988 MVYTFYNTSNSSLPSSNFSSRFISPSLHNYGASCGVLEPSNTLNLESSEKIEQQVNNNNNNGSEAEIRVGKNNNNDEDSDAKAIAALKNHSEAERRRRERINGHLATLRGLVSSTDKMDKATILAKVISQVKELKKNAMEASKGLLIPTDFDEVEVEPYEDGGVGDHGSMSYKASICCDYRPEIVSDLRHTIDALELQLVRAEISTLEGRMKNVFVYRCCKGKGHNNNTDACQALARNVQKALSCVIDKATNSLEYSVRASLPSKRRRICLLED 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121348g00002 274 MobiDBLite consensus disorder prediction 55 69 - -
Stsc121348g00002 274 PANTHER TRANSCRIPTION FACTOR BHLH30 51 270 IPR045847 GO:0003700|GO:0006355
Stsc121348g00002 274 SMART finulus 91 140 IPR011598 GO:0046983
Stsc121348g00002 274 MobiDBLite consensus disorder prediction 55 78 - -
Stsc121348g00002 274 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 88 136 IPR036638 GO:0046983
Stsc121348g00002 274 Gene3D - 82 143 IPR036638 GO:0046983
Stsc121348g00002 274 Coils Coil 185 205 - -
Stsc121348g00002 274 Pfam Helix-loop-helix DNA-binding domain 89 134 IPR011598 GO:0046983
Stsc121348g00002 274 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 85 134 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121348g00002 Stsc-Chr121348 7235 10221 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121348g00002 82 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 38.650 3.55e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc121348g00002 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121348g00002 - - gmx:100804756 277.715