Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121348g00001 ATGGGGGTGTTTTTCTGGTTTGCTGCAAAACTTGCACTGGTTCCCCCATTTGTGATAGCATTCTTAATTTACAAATGGATCAAGTTGAGGGATCAATCTGAATGTGATGATGAGGTTGAGGATTTCCTCCAAAACAATAATCTTGTTCCAATCAAGTACTCTTACTCTCACATAAAGAAAATGACCAATTGCTTCAAGCACAAGTTAGGTGAAGGAGGCTATGGCTCTGTCTACAAAGGAAAACTCCAAAGCAAACGTGATGTTGCTGTGAAGTTGTTGTCCAAATTCTCTAAGCCAAATCAACAACAGTTCATCAATGAAGTTGCCACCACTGGAAAGATTCGTCATGTCAATACGGTTCAGTTAATCGGATTTTGTGGCGAAAGAACTAAGCTCGCTCTGGTTTATGAGTACATGCCTAATGGTTCTCTTGACAAGTACATACTTAAGCAAGAACAAGGGAATGTTTCAATAAGCTATGAGAAAATTCACGACATTGCTATCGGCGTGGCACGAGGAATCGAATATTTACATGAAGGTTGTGATATGCAGATCTTGCACTTCGATATCAAACCTCACAACATTCTTCTAGACGAGAGTTTCAATCCAAAGATATCAGATTTCGGATTGGCAAAGTTATATCCGACAGATAATATCAATGTGTCTCTAACGGCCGCAAGAGGAACAATGGGATACATGGCACCTGAATTGTTCTACAAGAACATAGGAGGAATCTCATACAAAGCAGATGTTTATAGCTTTGGGATGTTGTTGATGGAAATGGCGGGTCGAAGAAAGAACTTGAATACTATAGAGTATTCTTGGCAGAGCTACTTTGACAGATGGGTCTATGATCAATTTGAGGAAACCATAAATGTTAGCAATGCCACGGAAGAGGAAAAGGTGATAGCAAAGAAGATGATAATGGTAGCTTTGCAGTGCATACAAATGAACCCAAATGATCGTCCTTCAATGAAAGAAGTAAGAAAGATGCTTGAAGGAGAAGCTGTTGTTCATCCACCAGAAAATCTGTTTACTAATTTGCAGGGTATGCCAATGGATAACTTGAATTGA 1074 0.3939 MGVFFWFAAKLALVPPFVIAFLIYKWIKLRDQSECDDEVEDFLQNNNLVPIKYSYSHIKKMTNCFKHKLGEGGYGSVYKGKLQSKRDVAVKLLSKFSKPNQQQFINEVATTGKIRHVNTVQLIGFCGERTKLALVYEYMPNGSLDKYILKQEQGNVSISYEKIHDIAIGVARGIEYLHEGCDMQILHFDIKPHNILLDESFNPKISDFGLAKLYPTDNINVSLTAARGTMGYMAPELFYKNIGGISYKADVYSFGMLLMEMAGRRKNLNTIEYSWQSYFDRWVYDQFEETINVSNATEEEKVIAKKMIMVALQCIQMNPNDRPSMKEVRKMLEGEAVVHPPENLFTNLQGMPMDNLN 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121348g00001 357 Gene3D Transferase(Phosphotransferase) domain 1 139 343 - -
Stsc121348g00001 357 SUPERFAMILY Protein kinase-like (PK-like) 49 333 IPR011009 -
Stsc121348g00001 357 Gene3D Phosphorylase Kinase; domain 1 36 138 - -
Stsc121348g00001 357 FunFam serine/threonine-protein kinase PBS1-like 31 138 - -
Stsc121348g00001 357 SMART serkin_6 63 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121348g00001 357 ProSiteProfiles Protein kinase domain profile. 63 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121348g00001 357 FunFam PR5-like receptor kinase 139 340 - -
Stsc121348g00001 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Stsc121348g00001 357 Pfam Protein kinase domain 66 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121348g00001 357 ProSitePatterns Protein kinases ATP-binding region signature. 69 91 IPR017441 GO:0005524
Stsc121348g00001 357 PANTHER RUST RESISTANCE KINASE LR10-RELATED 36 342 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121348g00001 Stsc-Chr121348 2279 4043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121348g00001 52 345 Receptor kinase-like Gene Family AT5G38280 53.115 2.62e-103 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc121348g00001 Pkinase 5.6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121348g00001 - - tpra:123914142 464.536