Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121347g00008 ATGTTACCGCATCAACAGCAGCAGCAGTACTATTCATCTTCAAATCCATTCCTTTGGGCTTCTGAATCTTCCATTCACCCTCCTGGAACCGATCCGGTTCCCAATTTCAGCGCCTATCTTTCAAATTCAACCCTTTCCGTTGCTCCTTCCTACTCTTATGCTGCCCCGCAATCAACCGATCCTCAGAATTGGATCGTTAAACAACCCCAATCCGTTGGATATGATGCTGCTGTTGGATCATCATCAGCAGTGTCTTCAAGTTTGCCTTTGACTTACCACGGCACATGGTTACAGCAAAATTTCACTCATGAGGCGACGGTGTTGTTGCCTAATGAAACCAAAGGCTCCAAATCAATGAGATGTGAAGTCTGCAAAATTGATTGTAATAGCAAAGATGTTTATGAAAAGCACATATCTGGAAAGAAACATAAGAAGAATATGCAGATAAATGCTAATCCCATGCTAGCGAATGGTGGCAATTATGTAGGCAGCGAGGTAAAGAAACGGAAGCTGTCAAATGGTGGTGCACCCGTTGATTCTGTGAAGGTTTGCACAGTTTGCAACATAGTGTGCAATAGCCAAGATGTATATAACAAACATATAGCCGGGAAAAAGCATGCAGCTCAGGTGAATTGTAAATTGAATATTAAACTTAATTTATTCTTTGCTCATGGTTTGCATCCATATACATCAACAAGAACAGCTAATTTTTGTCCCATTAGGTGGGTTAGCTACATGGATCAATGA 747 0.4137 MLPHQQQQQYYSSSNPFLWASESSIHPPGTDPVPNFSAYLSNSTLSVAPSYSYAAPQSTDPQNWIVKQPQSVGYDAAVGSSSAVSSSLPLTYHGTWLQQNFTHEATVLLPNETKGSKSMRCEVCKIDCNSKDVYEKHISGKKHKKNMQINANPMLANGGNYVGSEVKKRKLSNGGAPVDSVKVCTVCNIVCNSQDVYNKHIAGKKHAAQVNCKLNIKLNLFFAHGLHPYTSTRTANFCPIRWVSYMDQ 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121347g00008 248 Gene3D Classic Zinc Finger 102 149 - -
Stsc121347g00008 248 Gene3D Classic Zinc Finger 164 213 - -
Stsc121347g00008 248 SUPERFAMILY beta-beta-alpha zinc fingers 178 211 IPR036236 -
Stsc121347g00008 248 PANTHER ZINC FINGER RNA-BINDING PROTEIN 99 155 - -
Stsc121347g00008 248 SMART c2h2final6 182 206 IPR013087 -
Stsc121347g00008 248 SMART c2h2final6 119 143 IPR013087 -
Stsc121347g00008 248 SUPERFAMILY beta-beta-alpha zinc fingers 109 148 IPR036236 -
Stsc121347g00008 248 Pfam Zinc-finger of C2H2 type 183 206 - -
Stsc121347g00008 248 Pfam Zinc-finger of C2H2 type 120 143 - -
Stsc121347g00008 248 SMART ZnF_U1_5 179 213 IPR003604 GO:0003676|GO:0008270
Stsc121347g00008 248 SMART ZnF_U1_5 116 150 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121347g00008 Stsc-Chr121347 36381 37722 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121347g00008 103 207 C2H2 Transcription Factor Family AT5G61190 30.088 3.29e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc121347g00008 zf-met 9.1e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121347g00008 - - adu:107463587 339.347