Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121347g00007 ATGTTACCGCATCAACAGCAGCAGCAGTACTATTCATCTTCAAATCCATTCCTTTGGGCTTCTGAATCTTCCATTCACCCTCCTGGAACCGATCCGGTTCCCAATTTCAGCGCCTATCTTTCAAATTCAACCCTTTCCGTTGCTCCTTCCTACTCTTATGCTGCCCCGCAATCAACCGATCCTCAGAATTGGATCGTTAAACAACCCCAATCCGTTGGATATGATGCTGCTGTTGGATCATCATCAGCAGTGTCTTCAAGTTTGCCTTTGACTTACCACGGCACATGGTTACAGCAAAATTTCACTCATGAGGCGACGGTGTTGTTGCCTAATGAAACCAAAGGCTCCAAATCAATGAGATGTGAAGTCTGCAAAATTGATTGTAATAGCAAAGATGTTTATGAAAAGCACATATCTGGAAAGAAACATAAGAAGAATATGCAGATAAATGCTAATCCCATGCTAGCGAATGGTGGCAATTATGTAGGCAGCGAGGTAAAGAAACGGAAGCTGTCAAATGGTGGTGCACCCGTTGATTCTGTGAAGGTTTGCACAGTTTGCAACATAGTGTGCAATAGCCAAGATGTATATAACAAACATATAGCCGGGAAAAAGCATGCAGCTCAGGTTGCATTGATGTCTAACAACGGGATTGGTCCATACATTGCTGCATTTAAGAGTCAAGGTATTGGTCCTTGGAAGAAAGCACCAAAGAAGATCAAGGTTATGCAACCTGTATGGTGTGACGCTTGCAAGGTTACTTGTAATAGCAGGGATATGTATGCTTCACACTTAGTGGGGAAGAAACATCTCAAGAACTTGGAAAAACAGTCAAAACCAGAAGCCATTGCGAATGCTGGGAAACTGTTAATTGGCCCACAGGAAAAGCCGAATGCTGATAAAGTGAAATCGGAGGAAAATCCCGACAACGATAAACCAAAAGCAAAGNNNNNNNNNNGGATATCGAGGCGAAGAAGCTCAAGGTTGTAG 990 0.4273 MLPHQQQQQYYSSSNPFLWASESSIHPPGTDPVPNFSAYLSNSTLSVAPSYSYAAPQSTDPQNWIVKQPQSVGYDAAVGSSSAVSSSLPLTYHGTWLQQNFTHEATVLLPNETKGSKSMRCEVCKIDCNSKDVYEKHISGKKHKKNMQINANPMLANGGNYVGSEVKKRKLSNGGAPVDSVKVCTVCNIVCNSQDVYNKHIAGKKHAAQVALMSNNGIGPYIAAFKSQGIGPWKKAPKKIKVMQPVWCDACKVTCNSRDMYASHLVGKKHLKNLEKQSKPEAIANAGKLLIGPQEKPNADKVKSEENPDNDKPKAKXXXXISRRRSSRL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121347g00007 329 SUPERFAMILY beta-beta-alpha zinc fingers 242 277 IPR036236 -
Stsc121347g00007 329 SMART ZnF_U1_5 179 213 IPR003604 GO:0003676|GO:0008270
Stsc121347g00007 329 SMART ZnF_U1_5 243 277 IPR003604 GO:0003676|GO:0008270
Stsc121347g00007 329 SMART ZnF_U1_5 116 150 IPR003604 GO:0003676|GO:0008270
Stsc121347g00007 329 Pfam Zinc-finger of C2H2 type 183 206 - -
Stsc121347g00007 329 Pfam Zinc-finger of C2H2 type 121 143 - -
Stsc121347g00007 329 Pfam Zinc-finger of C2H2 type 247 270 - -
Stsc121347g00007 329 MobiDBLite consensus disorder prediction 298 318 - -
Stsc121347g00007 329 SUPERFAMILY beta-beta-alpha zinc fingers 178 213 IPR036236 -
Stsc121347g00007 329 Gene3D Classic Zinc Finger 234 281 - -
Stsc121347g00007 329 SMART c2h2final6 182 206 IPR013087 -
Stsc121347g00007 329 SMART c2h2final6 246 270 IPR013087 -
Stsc121347g00007 329 SMART c2h2final6 119 143 IPR013087 -
Stsc121347g00007 329 Gene3D Classic Zinc Finger 164 213 - -
Stsc121347g00007 329 Gene3D Classic Zinc Finger 102 149 - -
Stsc121347g00007 329 SUPERFAMILY beta-beta-alpha zinc fingers 109 148 IPR036236 -
Stsc121347g00007 329 MobiDBLite consensus disorder prediction 283 329 - -
Stsc121347g00007 329 PANTHER ZINC FINGER RNA-BINDING PROTEIN 99 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121347g00007 Stsc-Chr121347 35325 37722 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121347g00007 103 316 C2H2 Transcription Factor Family AT5G61190 24.074 3.33e-15 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc121347g00007 zf-met 1.7e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121347g00007 - - adu:107463587 541.191