Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121347g00003 ATGCCTCTGACAGAGGAACAGAGGCAACAAATCGAAGCAAATCGCCAAGCAGCTCTCGCCAAACGCAAAGCATTTCTCGAATCCCAACAACAACAGCAGCAGCAGCAGCAGCAGCTAATTTTCAAATGCCAGAAGCTCAACAACAACCCCAACTCTTTTTCAACATCCAAACACGCCCTTATTCCAAAGTTCCTTGCCAGCCTCGAAATATGCTCACCGGACTCCTTCTCCGTCACGCCTATCCCCTCCAACGACCACACCTTCTCCGCCCTCAACACCATCCTCTCCGATCACCTCCCCTCTCACTTCACCCAGATCTCCACCTCCGTTCCCGATGCCTCCGTCTACAACCTCTCCGACTACCTCCTTGTCCTCAAACGCCTCAAGGCTGCGTCGCACCAGATTTCTGAAGTGGAGGAAATTCCCTGGAACACCCTCAAAGCCGTTGAGACCATGATGCTGGCGTCTGGTGGTGGCAGCACCTGGAAGCCGGTGAGGCCCGAGCATCTCACGGACGAGCAGGTGGACGACCTCATCGCCAAGCTGCCAAGGTGTTTGGTGGATGCTCTGATGCCGTTTCAGGTGGATGGGATTAGGTTTGGACTCAGAAGGGGTGGAAGGTGCCTCATCGCTGATGACATGGGACTTGGAAAGACCCTTCAGGCGATTGCTATTGCGGGATGTTTCATGCATGAAGGTCCTATACTTGTGGTTTGCCCTGCTGTTTTGCGTTTTTCGTGGGCAGAAGAATTGGAACGTTGGCTTCCTATTTGTTTGCCTGCTGATATTCATCTTGTTTTTGGCCATCAAGATAACCCTATACATTTAACAAGATGCCCTAGAATTGTGGTTATTTCTTATACCATGCTCTGTCGTCTAAAGAAGAACATGATTGAGCTTGACTGGGCTCTCCTGATTGTTGATGAATCTCACCATGTGCGATGCACGAAGAAAGCCAAAGAGTCAGGAGAGACAGAAGCTGTTCTTGATGTGGCAACAAAAGTCAAGCGTATAGTTCTGCTATCAGGGACTCCCTCACTATCAAGGCCTGGTTTGTTGGGGACAAATAAACGTGAGTTTGCAAAAACTTATTGTGACATGAAACTTGTCATGGGCATCAAAGGAAAAGTGTTTGCGATAAGGCGTTTGAAGGAACATGTGATGCTACAGTTACCTCCAAAGAGGCGGCAAATTATAAGACTGCAGTTGAAGAGACCAGATATAGTTGCTGCAAAAACTGCAGTTGGGGCATTGACGATTGATGACCCCGAACGTGAAAGTGAAGACATGCCTATAGAAAATTCAGATGAACTTGATGGGTACCTTTCTGTCCAAGAACTTGGGATTGCAAAGCTTTCTGGGTTTCGTGAATGGCTTTCCCTCCATCCACTGATAGCAGGATCAGAGAATTCTAAAAAGATGATAATTTTTGCTCATCACATCAAAGTTCTTGATGGAATACAGGAGTTCATATGTGAGAAAGGTGTAGGTTTTGTGCGGATTGATGGAAGTACACTTCCAAGAGATAGGCAATCAGCAGTAGTATCATTTCGATCATCATCGGAGGTTAAAATTGCAATAATAGGTATTTTGGCAGCAGGTTTTGGACTTGACTTCTCAACAGCACAAGATGTGGTGTTCTTGGAGCTACCTCAGTGCCCAACTGTAATGCTTCAGGCTGAGGATAGAGCTCATCGACGGGGGCAAACAAATGCAGTTAATGTATACATATTCTCTGCAAAGGATACCTCGGATGAGTTGCGTTGGAAAAATTTGAATACAAGTTTGCACCGTATTTCAAAAACAACAGATGGAAAATATGATGCAATGAAGGAGATAGTGATTGATAATGTTTCTGACTTAGGGACATCTTTCAAAACTGATACTTCTGATGAGCAATCTGCATGTGAAGAGGCATTAGTTGAAACACTGTTGGATAAGCAACCATCCCCAGTAAATTCAAATGAATCTGAAGTAAAGCAAGATGATAAATCTGATGAGCAGGCTTCTTTTGACAATAACTCAATTTGTACTGCTAATATTACGGTGCAGGACAAGAAACCAATTCCAACAGCAGAAGCAGATGACATCCAGCCTGATCATCAACTTGAAACTGATAGACATGGGTCTAATGAAGCTGATTGTCTGCGTTTTGAGGTGAGCCCATACACTGGTAGGATCCACTTGTATTCTTGTGTTATGGGTACAGATGTAAGACCACGGCCACTTTATGAAAGTTTCCGACCAGAGGAACTTGAGTTGCTATGTGCTGTTGCTGATGGTGAGAAGACAGAAGTTAAATCTGTCAGGGACAATCCTGTTTATAGGCAGGCTCTCATGGACTTTGCAAATGAGTGGAAGAATTTGAGGCCAATTGAACGGAAGAAGTTACTTGGGAAACCATTACAACTTCCTTTGGCAGTTGAACTATGCTATTTGAGTGAAAGCAATAACCACAATAACAAGGGATTATTAAATGGTGGAAGCAAACGACGTATGACACCTTTGGTGGAGGTTTGCCATCCTTTACCATCAGATGCTGTTTGGAAGAAGGTTTATCTGCGAAGCGGCCTTGGTAAGAAGGAAAAAGAATATACTCAAGGCTGGAGTGTGACAGATGAACCACTGTGTAAACTTTGTCAAAAGCAGTGCATGGGTAAGAATGCGAAGGCACCTGAATTTTTTGAAGACCTGTTTTGTAGCCTTCGCTGCTATGAAGAGTATCGCATGAGAACAAGCAACAGATTCCTACGTCAGGAACTTTTCCAAATTGAACATGGTGTGTGCACAAATTGCCTATTGGACTGCCATAAGCTTGTTGAGCACATAAAACCTTTATCATTGGAAAGGCGACGAGAGTACATTGAGAAAGTAGCACCAAAAGTTGCAAAGCGGAAGAAGATGTTTGAGAAGCTTGTCAGTGATCCCACTGAAGGCCATGCATGGCATGCTGATCATATTATTCCAGTATATCAAGGAGGAGGTGAATGCAAACTGGAAAATATGAGGACTCTGTGTGTGGCCTGCCATTATGGTGTAACGAAAGCACAGTGTAATGAACGACGCAAAGAAAGAGCAAATGCCAAGAAACACCTGAAATTAGTAATGAATAACCTTAAAAATGGTCTGACAGGCACCACTGTCTCTAATGCTAAGGAACATGAGGCACTGGAAGGAGATAAGCTCTTAATCAACGTTCCAGGAAGTGCATATTCTCTAGCTGATCCCTAA 3231 0.4438 MPLTEEQRQQIEANRQAALAKRKAFLESQQQQQQQQQQLIFKCQKLNNNPNSFSTSKHALIPKFLASLEICSPDSFSVTPIPSNDHTFSALNTILSDHLPSHFTQISTSVPDASVYNLSDYLLVLKRLKAASHQISEVEEIPWNTLKAVETMMLASGGGSTWKPVRPEHLTDEQVDDLIAKLPRCLVDALMPFQVDGIRFGLRRGGRCLIADDMGLGKTLQAIAIAGCFMHEGPILVVCPAVLRFSWAEELERWLPICLPADIHLVFGHQDNPIHLTRCPRIVVISYTMLCRLKKNMIELDWALLIVDESHHVRCTKKAKESGETEAVLDVATKVKRIVLLSGTPSLSRPGLLGTNKREFAKTYCDMKLVMGIKGKVFAIRRLKEHVMLQLPPKRRQIIRLQLKRPDIVAAKTAVGALTIDDPERESEDMPIENSDELDGYLSVQELGIAKLSGFREWLSLHPLIAGSENSKKMIIFAHHIKVLDGIQEFICEKGVGFVRIDGSTLPRDRQSAVVSFRSSSEVKIAIIGILAAGFGLDFSTAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFSAKDTSDELRWKNLNTSLHRISKTTDGKYDAMKEIVIDNVSDLGTSFKTDTSDEQSACEEALVETLLDKQPSPVNSNESEVKQDDKSDEQASFDNNSICTANITVQDKKPIPTAEADDIQPDHQLETDRHGSNEADCLRFEVSPYTGRIHLYSCVMGTDVRPRPLYESFRPEELELLCAVADGEKTEVKSVRDNPVYRQALMDFANEWKNLRPIERKKLLGKPLQLPLAVELCYLSESNNHNNKGLLNGGSKRRMTPLVEVCHPLPSDAVWKKVYLRSGLGKKEKEYTQGWSVTDEPLCKLCQKQCMGKNAKAPEFFEDLFCSLRCYEEYRMRTSNRFLRQELFQIEHGVCTNCLLDCHKLVEHIKPLSLERRREYIEKVAPKVAKRKKMFEKLVSDPTEGHAWHADHIIPVYQGGGECKLENMRTLCVACHYGVTKAQCNERRKERANAKKHLKLVMNNLKNGLTGTTVSNAKEHEALEGDKLLINVPGSAYSLADP 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121347g00003 1076 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 373 IPR027417 -
Stsc121347g00003 1076 Gene3D - 425 670 IPR027417 -
Stsc121347g00003 1076 SMART ultradead3 186 387 IPR014001 -
Stsc121347g00003 1076 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1031 - -
Stsc121347g00003 1076 Coils Coil 3 23 - -
Stsc121347g00003 1076 CDD SF2_C_SNF 450 578 - -
Stsc121347g00003 1076 Gene3D - 903 1037 - -
Stsc121347g00003 1076 Gene3D - 188 353 IPR038718 -
Stsc121347g00003 1076 Pfam SNF2-related domain 208 345 IPR000330 GO:0005524|GO:0140658
Stsc121347g00003 1076 MobiDBLite consensus disorder prediction 645 671 - -
Stsc121347g00003 1076 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 199 363 IPR014001 -
Stsc121347g00003 1076 Pfam HNH endonuclease 978 1010 IPR002711 GO:0003676|GO:0004519|GO:0008270
Stsc121347g00003 1076 SMART helicmild6 485 568 IPR001650 -
Stsc121347g00003 1076 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 460 607 IPR001650 -
Stsc121347g00003 1076 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 621 IPR027417 -
Stsc121347g00003 1076 CDD HNHc 975 1010 IPR003615 -
Stsc121347g00003 1076 Pfam Helicase conserved C-terminal domain 465 568 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121347g00003 Stsc-Chr121347 15223 25984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121347g00003 472 586 RAD5 or RAD16-like Gene Family AT1G11100 36.522 7.49e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc121347g00003 SNF2_N 2.3e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121347g00003 K25861 - gmx:100788690 1471.06