Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121347g00001 ATGAGTATGAGTAGTAGTAGTCATCAATATTATTTGGTTCCAAAGTGGAACATGAAACAACAACGAAGACAAGAACAAGACCATCAACAGCTCCAATTAGAAGACCCTATTATTATTACCGAATCTTCTCAACCTCCTTCCACCAATCATCTTCCTCCCATGTCTAATAATTATGATGAGATTGCAGAGCTGACCTGGGAAAATGGGCAGATATCAATGCATGGGCTTAGTGGGCTTGCTCCCACTTCACAAGCAAAGCCCACATGGGTTAATAGGGCCCATGATACATTAGAGTCCATTGTTGAGCAAGCCACATGCAACAATAAAAAGTCAAAGTTGAGCATAAAAGACAACCATGGTTATGTTCCAACAAACTCCAATGTTGCATCCTCATCAGGGGAACATCATCAAATGGTGGTGCCAACCCTTTCAAGGAAAAGATCACATTTTGATCAGAGAGATGTTAATTATGTTAGCATCAATAATACTAATAAGAAGATGTTATTAGAAGAAGAACATACTAATACTAATAATAGAAAATGTGTTAGTGCTAGTGCCACATTTTGTAGGGATAACAATGACATCACAACCATGATGACGTGGCCTTCTCTTGACTCTGCTCCAAGAACCTTCAACCATCACAAGATTCTTGAAGAGGATTCAGCTTGTCACAGTGGATCGGAAATTGGAAATAATGCGAATGATAGAGATAGTAATGGAAAAGGTGAAAGAGTGCAAAGCAAATCATCATCAAGGCGAAATAGAACTGCTGCTGTACATAACCAATCAGAGCGGAGAAGAAGAGATAGAATTAATGAGAAGATGAAAGCGTTGCAGAAATTAGTACCTAATGCAAATAAGACAGACAAAGCTTCAATGTTAGATGAGGTGATTAGATACTTGAAACAACTTCAAGCACAAATAGAAATGATGATGAGTTTGAGTGTGATGAGCATGCCACAGATGATGATGATGCAACAACAACAACAACTTCAAATGTCTTCTATGATAGCCGCAGCAAGATCATCAATGGCTTCTAACAATACTACTCCAAATCCAGTTATTAGGCCGCCATCGTTCCCACCACAACTCATCCAACCAACAACAACAATTGGAGGAGCTGCTAATCCCATGATGTTTCTTGCACCTTCTTTCATGATGCCTTCAAACACCACCAATGCTGCTTCAATTCATTTGCCTTCTGCTTCTTCTTCATATGGGAATGGGACTACTACTTTTCCACAACCACTTAATATGGATCTGTTCAACAACATGGCAGCATTTTACAGTCAACAGCAGATGAATCATCATCACAACAATCAAATCAAACCATGA 1335 0.391 MSMSSSSHQYYLVPKWNMKQQRRQEQDHQQLQLEDPIIITESSQPPSTNHLPPMSNNYDEIAELTWENGQISMHGLSGLAPTSQAKPTWVNRAHDTLESIVEQATCNNKKSKLSIKDNHGYVPTNSNVASSSGEHHQMVVPTLSRKRSHFDQRDVNYVSINNTNKKMLLEEEHTNTNNRKCVSASATFCRDNNDITTMMTWPSLDSAPRTFNHHKILEEDSACHSGSEIGNNANDRDSNGKGERVQSKSSSRRNRTAAVHNQSERRRRDRINEKMKALQKLVPNANKTDKASMLDEVIRYLKQLQAQIEMMMSLSVMSMPQMMMMQQQQQLQMSSMIAAARSSMASNNTTPNPVIRPPSFPPQLIQPTTTIGGAANPMMFLAPSFMMPSNTTNAASIHLPSASSSYGNGTTTFPQPLNMDLFNNMAAFYSQQQMNHHHNNQIKP 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121347g00001 444 CDD bHLH_AtPIF_like 255 309 IPR047265 -
Stsc121347g00001 444 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 252 317 IPR036638 GO:0046983
Stsc121347g00001 444 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 62 435 IPR031066 -
Stsc121347g00001 444 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 255 304 IPR011598 GO:0046983
Stsc121347g00001 444 SMART finulus 261 310 IPR011598 GO:0046983
Stsc121347g00001 444 Coils Coil 261 288 - -
Stsc121347g00001 444 Pfam Helix-loop-helix DNA-binding domain 259 305 IPR011598 GO:0046983
Stsc121347g00001 444 MobiDBLite consensus disorder prediction 258 272 - -
Stsc121347g00001 444 Gene3D - 250 313 IPR036638 GO:0046983
Stsc121347g00001 444 MobiDBLite consensus disorder prediction 222 272 - -
Stsc121347g00001 444 FunFam Basic helix-loop-helix transcription factor 250 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121347g00001 Stsc-Chr121347 7746 10810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121347g00001 60 320 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 38.007 7.42e-37 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc121347g00001 HLH 2.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121347g00001 - - aip:107624044 542.732