Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121345g00003 ATGGATGGACAGACAAGATCATACACTTGTGTTTTTTGTAATAGAGGATTCTCAAATGCACAAGCACTTGGAGGCCACATGAATATTCATAGAAGAGATAGAGCCAGGCTTAGGCAATCACTTGAAGAGAGAATGTTGCTTCAAATTGATGATGACCAACAAAAAGTTGTTAATAATAGCAACCATAATAAGAAGCCATGGAATTTTCTAGAAATAGTTGATGATCATGATCATGATGATTATGCAATCCAAAGGGGCAAAAAAGGAACAATCATTGGTAGTACATCAGAAATTCCTCATCATCAATTCCCATCATCACTTCTTGTTGGGGTGCCACATAATTATAATAATTATATGAATGAGATAAGGAGAGGTATTATTGAAGAGAAGAAGAACATTGAAGTGGATCTTGAGCTTCGTTTAGGGTTTATTGAGCCAAAAGAAGCACCAACTTTGAGCACTAGGGAATTCTTCTAA 477 0.3585 MDGQTRSYTCVFCNRGFSNAQALGGHMNIHRRDRARLRQSLEERMLLQIDDDQQKVVNNSNHNKKPWNFLEIVDDHDHDDYAIQRGKKGTIIGSTSEIPHHQFPSSLLVGVPHNYNNYMNEIRRGIIEEKKNIEVDLELRLGFIEPKEAPTLSTREFF 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121345g00003 158 PANTHER OS07G0101800 PROTEIN 5 142 - -
Stsc121345g00003 158 SUPERFAMILY beta-beta-alpha zinc fingers 5 34 IPR036236 -
Stsc121345g00003 158 ProSitePatterns Zinc finger C2H2 type domain signature. 10 30 IPR013087 -
Stsc121345g00003 158 Gene3D Classic Zinc Finger 1 66 - -
Stsc121345g00003 158 ProSiteProfiles Zinc finger C2H2 type domain profile. 8 35 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121345g00003 Stsc-Chr121345 22895 23698 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121345g00003 4 43 C2H2 Transcription Factor Family AT3G09290 82.500 1.04e-18 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc121345g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121345g00003 - - adu:107475090 249.98