Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121345g00002 ATGGAACAGGGTCAGTATTGGACGATGCAAACAAAGAGAAAATTCTCTTTAGGGTACAACAACAATAACATAGACCGTTCTTCGTACGACGAATCGTCGTGGGAAGAACAAGCTTTCGCCGAAGACGCGGCCGGAGCCCTTGTTGGTGGATGCATATGGCCACCAAGATCATATTCTTGCAGCTTTTGTAGGAGAGAATTTAGGTCAGCACAAGCTCTTGGTGGACACATGAATGTTCATAGAAGGGATAGAGCAAGGCTTAAGCAACAACAACCTTCTAGCCCCAACAACAAGAACAATGATGATGAAGTTATTATCCAAAATAATCATCCTTTCACATCTTTGGGTTCATCATGTAATACCCTTTTATACCCTTCTACCTCAACTTCTACTTCTACTACTACTATTTGTGGATTAGCTTTTAAAACTAATAACCCTAATTCTGATCTTGTTCCTTCAGCTTCTTCTTCATCACTAATACCCTCTCCTCCTTCTTCTTCTTCCAAGGCCTTATTATTGGCTCCTCCATCATTATTTCCATCTTCTTCTATTCTTGTTCATAAGAACCATTCCCAAGTCTATTGCTCCCAACCATGGTCAAACTTTGGTGAAGATAATAATAATAATAATCAAAGGTTGTGTTCTAATAATAAGTTCAACCCTGAAGAAGCTGATGTTGATCATGAGAAAATCTCACAAGGGTTATTAGATAAAGGAAAAAATAATGAAGGAGAAGACTGCGACGATGAGGACGAAGATGAAGACGAAGATGTGGGTGTGAGCTTGAATTTGGTTGTTTGTAGAACTCATCATCGTCAATTTGAGGCTAAAGAGGAAGAACATCACATAAGTTTCAAGAAGAAGAGGAAATCAGAAGCTTCATCAATTCAATTTTTACCAAAGTCAACAAGCTCAGTTGATCGACATAATCATCATCACATGCATCCAAAGATGATTAAATTAAACCCTAACTCCATTGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAACTGCAGCTCCGAGGTATAG 1029 0.3897 MEQGQYWTMQTKRKFSLGYNNNNIDRSSYDESSWEEQAFAEDAAGALVGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQQPSSPNNKNNDDEVIIQNNHPFTSLGSSCNTLLYPSTSTSTSTTTICGLAFKTNNPNSDLVPSASSSSLIPSPPSSSSKALLLAPPSLFPSSSILVHKNHSQVYCSQPWSNFGEDNNNNNQRLCSNNKFNPEEADVDHEKISQGLLDKGKNNEGEDCDDEDEDEDEDVGVSLNLVVCRTHHRQFEAKEEEHHISFKKKRKSEASSIQFLPKSTSSVDRHNHHHMHPKMIKLNPNSIEELDLELRLGNCSSEV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121345g00002 342 Gene3D Classic Zinc Finger 55 111 - -
Stsc121345g00002 342 MobiDBLite consensus disorder prediction 150 169 - -
Stsc121345g00002 342 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Stsc121345g00002 342 SMART c2h2final6 58 80 IPR013087 -
Stsc121345g00002 342 MobiDBLite consensus disorder prediction 89 104 - -
Stsc121345g00002 342 PANTHER OS07G0101800 PROTEIN 28 337 - -
Stsc121345g00002 342 MobiDBLite consensus disorder prediction 244 258 - -
Stsc121345g00002 342 SUPERFAMILY beta-beta-alpha zinc fingers 55 84 IPR036236 -
Stsc121345g00002 342 MobiDBLite consensus disorder prediction 212 258 - -
Stsc121345g00002 342 MobiDBLite consensus disorder prediction 221 243 - -
Stsc121345g00002 342 Pfam C2H2-type zinc finger 58 82 - -
Stsc121345g00002 342 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Stsc121345g00002 342 MobiDBLite consensus disorder prediction 281 311 - -
Stsc121345g00002 342 MobiDBLite consensus disorder prediction 74 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121345g00002 Stsc-Chr121345 11441 12496 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121345g00002 24 177 C2H2 Transcription Factor Family AT2G37740 44.242 1.01e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc121345g00002 zf-C2H2_6 1.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121345g00002 - - adu:107475041 429.098