Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121344g00004 ATGTCAAGTTTCCCTGATGCGGTGGCTGATGGCCGGAGGTACGGCAAGGCGCCGGAGAAGTCTAATTTTTCTCAGACTTGCAGCCTCTTGAGTCAGTTCTTGAAGGAGAAGCGTTCTTCTGGAGCTTCTTCTCTCGGAGTTGCCCCAAAAATGGAGCCCAGAGCAAGTACCAAGGATTTTCTAGGAAGTGTTCATAATTCAGATGGGGGTTTGAGACTAAATGCTTCTGCTCTGGATTCCCTTCCTCAGCATGTGGAAAATCCCTGCATCAAGAAGTCTAATATTAGGTCATTGGGGTCTGAATCTCCACAGTTGACCATATTCTATGCCGGAAAAATGTTGGTATTCGATGCCTTCCCACCAGACAAGGCCACAGAGGTAATGGAGTTAGCCACCAAGTTAGCCTCGAACGGTTCCATTGTCGAACAAAGCCAACCCAGTGCTTCGGTTGCAACTGAAAATTTGAATAAGGACAAGGTGCTGCAGACAAATAATGCCTCTGAAACTCCTAGGCCAGGAAACCAAGCTGTTGGTTCAGATATGAGGTATCCAAGGAGAGCTTCACTTCTAAAGTTCCTTGAGAAGAGAAAAGAAAGGGTCATCGCCAGAGGACCTTACCAAGTAAACAACCCGAATCCGAAGCCCGAGGGCAGCAGCAGTTCCGGAGGCGAACTGTGCCCGATAAACAGCCCGAATTTGAAGCATGAAGAAAGCAGTTCAGGGGTTGTACCCGAAGATCAGTCCTCCAAACACTTTGACCTTAATTCGTAG 771 0.4786 MSSFPDAVADGRRYGKAPEKSNFSQTCSLLSQFLKEKRSSGASSLGVAPKMEPRASTKDFLGSVHNSDGGLRLNASALDSLPQHVENPCIKKSNIRSLGSESPQLTIFYAGKMLVFDAFPPDKATEVMELATKLASNGSIVEQSQPSASVATENLNKDKVLQTNNASETPRPGNQAVGSDMRYPRRASLLKFLEKRKERVIARGPYQVNNPNPKPEGSSSSGGELCPINSPNLKHEESSSGVVPEDQSSKHFDLNS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121344g00004 256 MobiDBLite consensus disorder prediction 211 256 - -
Stsc121344g00004 256 Pfam tify domain 101 131 IPR010399 -
Stsc121344g00004 256 ProSiteProfiles Tify domain profile. 98 133 IPR010399 -
Stsc121344g00004 256 Pfam Jas motif 185 207 IPR018467 -
Stsc121344g00004 256 MobiDBLite consensus disorder prediction 201 256 - -
Stsc121344g00004 256 SMART tify_2 98 133 IPR010399 -
Stsc121344g00004 256 MobiDBLite consensus disorder prediction 1 23 - -
Stsc121344g00004 256 MobiDBLite consensus disorder prediction 161 182 - -
Stsc121344g00004 256 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 16 216 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121344g00004 Stsc-Chr121344 30504 33558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121344g00004 8 223 Tify Gene Family AT1G19180 33.730 6.44e-23 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Stsc121344g00004 tify 1.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121344g00004 K13464 - gmx:100778559 322.013